Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   JIX55_RS47050 Genome accession   NZ_CP102513
Coordinates   10779982..10780584 (-) Length   200 a.a.
NCBI ID   WP_257561767.1    Uniprot ID   -
Organism   Streptomyces sp. DSM 40750     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 10774982..10785584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIX55_RS47030 (JIX55_47030) - 10776531..10777742 (-) 1212 WP_257561770.1 C45 family peptidase -
  JIX55_RS47035 (JIX55_47035) - 10777869..10778774 (+) 906 WP_257561769.1 MurR/RpiR family transcriptional regulator -
  JIX55_RS47040 (JIX55_47040) - 10778827..10779417 (+) 591 WP_257561768.1 DinB family protein -
  JIX55_RS47045 (JIX55_47045) - 10779499..10779873 (+) 375 WP_306819979.1 helix-turn-helix transcriptional regulator -
  JIX55_RS47050 (JIX55_47050) clpP 10779982..10780584 (-) 603 WP_257561767.1 ATP-dependent Clp protease proteolytic subunit Regulator
  JIX55_RS47055 (JIX55_47055) clpP 10780584..10781240 (-) 657 WP_257561766.1 ATP-dependent Clp protease proteolytic subunit Regulator
  JIX55_RS47060 (JIX55_47060) - 10781460..10781939 (+) 480 WP_257561765.1 VOC family protein -
  JIX55_RS47065 (JIX55_47065) - 10782099..10783097 (+) 999 WP_257561764.1 TerC family protein -
  JIX55_RS47070 (JIX55_47070) - 10783094..10783453 (-) 360 WP_257561763.1 DUF6193 family natural product biosynthesis protein -
  JIX55_RS47075 (JIX55_47075) - 10783531..10784451 (-) 921 WP_257561762.1 SGNH/GDSL hydrolase family protein -
  JIX55_RS47080 (JIX55_47080) - 10784574..10785251 (-) 678 WP_257561761.1 DUF3105 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21507.35 Da        Isoelectric Point: 4.7549

>NTDB_id=616971 JIX55_RS47050 WP_257561767.1 10779982..10780584(-) (clpP) [Streptomyces sp. DSM 40750]
MGTYTIPNVVERTPQGERSYDVFSRLLSERIIFLGTEIDDGVANVVIAQLLHLESSAPESEIAIYINSPGGSFTSLMAIY
DTMTFVQAPISTFCVGQAASTAAVLLAGGDPGRRFVLEHARVLLGQPASGGRQGTVSDLSLQAKEMVRIRAQVEGVLARH
THRDAGELRADMDRDKVFTAEEAVAYGLADEVLGRRVVGD

Nucleotide


Download         Length: 603 bp        

>NTDB_id=616971 JIX55_RS47050 WP_257561767.1 10779982..10780584(-) (clpP) [Streptomyces sp. DSM 40750]
ATGGGGACGTACACCATTCCGAACGTGGTCGAGCGGACGCCGCAGGGCGAGCGGTCGTACGACGTGTTCAGCCGGCTGCT
GTCCGAGCGGATCATCTTCCTCGGCACGGAGATCGACGACGGGGTGGCCAACGTCGTCATCGCGCAGCTGCTCCATCTGG
AGTCGTCGGCGCCGGAGAGCGAGATCGCGATCTACATCAACTCGCCCGGGGGATCGTTCACTTCCCTGATGGCGATCTAC
GACACGATGACGTTCGTGCAGGCGCCGATCTCGACGTTCTGCGTCGGGCAGGCGGCCTCCACGGCGGCGGTGCTGCTGGC
CGGCGGGGACCCCGGGCGGCGGTTCGTACTGGAGCACGCGCGGGTGCTGCTGGGGCAGCCGGCGAGTGGTGGCCGGCAGG
GCACGGTCTCCGACCTCTCCCTTCAGGCCAAGGAGATGGTGCGGATCCGTGCGCAGGTCGAGGGGGTTCTCGCCCGGCAT
ACGCACCGTGATGCGGGGGAGCTGCGGGCCGACATGGATCGGGACAAGGTGTTCACGGCGGAGGAGGCGGTGGCGTACGG
GCTGGCGGACGAGGTGTTGGGTCGGCGGGTGGTGGGTGACTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

48.936

94

0.46
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

45.263

95

0.43
  clpP Streptococcus pyogenes MGAS315

39.683

94.5

0.375
  clpP Streptococcus pyogenes JRS4

39.683

94.5

0.375
  clpP Streptococcus pneumoniae Rx1

38.542

96

0.37
  clpP Streptococcus pneumoniae R6

38.542

96

0.37
  clpP Streptococcus pneumoniae TIGR4

38.542

96

0.37
  clpP Streptococcus pneumoniae D39

38.542

96

0.37
  clpP Lactococcus lactis subsp. cremoris KW2

38.743

95.5

0.37
  clpP Streptococcus mutans UA159

38.624

94.5

0.365