Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LJA38_RS07050 Genome accession   NZ_CP085283
Coordinates   1379523..1380119 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374523..1385119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS07020 - 1374737..1375192 (+) 456 WP_024085239.1 flavodoxin -
  LJA38_RS07025 dapD 1375274..1375984 (+) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LJA38_RS07030 - 1376055..1377179 (+) 1125 WP_024085240.1 N-acetyldiaminopimelate deacetylase -
  LJA38_RS07035 - 1377240..1377485 (+) 246 WP_003154596.1 YkuS family protein -
  LJA38_RS07040 - 1377519..1378325 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  LJA38_RS07045 - 1378613..1379071 (+) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  LJA38_RS07050 rok 1379523..1380119 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  LJA38_RS07055 - 1380140..1381132 (-) 993 WP_003154589.1 hypothetical protein -
  LJA38_RS07060 - 1381278..1381880 (+) 603 WP_024085242.1 molybdenum cofactor guanylyltransferase -
  LJA38_RS07065 - 1381932..1382951 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  LJA38_RS07070 glp 1382969..1384261 (+) 1293 WP_063174789.1 gephyrin-like molybdotransferase Glp -
  LJA38_RS07075 mobB 1384222..1384743 (+) 522 WP_063174790.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=616964 LJA38_RS07050 WP_003154591.1 1379523..1380119(+) (rok) [Bacillus velezensis strain TPS3N]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=616964 LJA38_RS07050 WP_003154591.1 1379523..1380119(+) (rok) [Bacillus velezensis strain TPS3N]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCAGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATCTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843