Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LJA38_RS06950 Genome accession   NZ_CP085283
Coordinates   1363650..1364114 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain TPS3N     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358650..1369114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS06930 - 1359130..1360950 (+) 1821 WP_003154628.1 PAS domain-containing protein -
  LJA38_RS06935 - 1360976..1362145 (-) 1170 WP_007611083.1 aminotransferase A -
  LJA38_RS06940 - 1362346..1362507 (-) 162 WP_007409608.1 hypothetical protein -
  LJA38_RS06945 cheV 1362696..1363607 (+) 912 WP_014304917.1 chemotaxis protein CheV -
  LJA38_RS06950 kre 1363650..1364114 (-) 465 WP_003154622.1 YkyB family protein Regulator
  LJA38_RS06955 - 1364237..1365529 (-) 1293 WP_024085236.1 MFS transporter -
  LJA38_RS06960 - 1365605..1366099 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  LJA38_RS06965 - 1366174..1367037 (-) 864 WP_024085238.1 metallophosphoesterase -
  LJA38_RS06970 fadH 1367181..1367945 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  LJA38_RS06975 - 1368055..1368600 (+) 546 Protein_1316 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=616963 LJA38_RS06950 WP_003154622.1 1363650..1364114(-) (kre) [Bacillus velezensis strain TPS3N]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=616963 LJA38_RS06950 WP_003154622.1 1363650..1364114(-) (kre) [Bacillus velezensis strain TPS3N]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929