Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LJA38_RS05555 Genome accession   NZ_CP085283
Coordinates   1101907..1102860 (+) Length   317 a.a.
NCBI ID   WP_015417205.1    Uniprot ID   -
Organism   Bacillus velezensis strain TPS3N     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1096907..1107860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS05530 argF 1098725..1099696 (+) 972 WP_015417202.1 ornithine carbamoyltransferase -
  LJA38_RS05535 - 1099772..1099951 (+) 180 WP_003155070.1 YjzC family protein -
  LJA38_RS05540 - 1099988..1100173 (-) 186 WP_003155069.1 YjzD family protein -
  LJA38_RS05545 - 1100434..1101168 (+) 735 WP_015417203.1 hypothetical protein -
  LJA38_RS05550 - 1101251..1101817 (+) 567 WP_015417204.1 NAD(P) binding enzyme -
  LJA38_RS05555 med 1101907..1102860 (+) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  LJA38_RS05560 comZ 1102873..1103064 (+) 192 WP_003155061.1 ComZ family protein Regulator
  LJA38_RS05565 - 1103093..1103311 (-) 219 WP_007409123.1 hypothetical protein -
  LJA38_RS05570 - 1103479..1104417 (+) 939 WP_003155057.1 beta-ketoacyl-ACP synthase III -
  LJA38_RS05575 fabF 1104440..1105678 (+) 1239 WP_003155056.1 beta-ketoacyl-ACP synthase II -
  LJA38_RS05580 - 1105762..1106547 (+) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LJA38_RS05585 - 1106721..1107707 (+) 987 WP_003155054.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35328.96 Da        Isoelectric Point: 4.6686

>NTDB_id=616956 LJA38_RS05555 WP_015417205.1 1101907..1102860(+) (med) [Bacillus velezensis strain TPS3N]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGSLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616956 LJA38_RS05555 WP_015417205.1 1101907..1102860(+) (med) [Bacillus velezensis strain TPS3N]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAACAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TTCGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782