Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   JIX55_RS32745 Genome accession   NZ_CP102513
Coordinates   7333334..7333708 (+) Length   124 a.a.
NCBI ID   WP_257566828.1    Uniprot ID   -
Organism   Streptomyces sp. DSM 40750     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 7328334..7338708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIX55_RS32725 (JIX55_32725) - 7328775..7330334 (-) 1560 WP_257566824.1 VWA domain-containing protein -
  JIX55_RS32730 (JIX55_32730) - 7330331..7331512 (-) 1182 WP_257566825.1 toxic anion resistance protein -
  JIX55_RS32735 (JIX55_32735) - 7331534..7332604 (-) 1071 WP_257566826.1 substrate-binding domain-containing protein -
  JIX55_RS32740 (JIX55_32740) - 7332963..7333334 (+) 372 WP_257566827.1 response regulator -
  JIX55_RS32745 (JIX55_32745) chiS 7333334..7333708 (+) 375 WP_257566828.1 response regulator Regulator
  JIX55_RS32750 (JIX55_32750) - 7333705..7334805 (+) 1101 WP_257566829.1 HEAT repeat domain-containing protein -
  JIX55_RS32755 (JIX55_32755) - 7334808..7336292 (+) 1485 WP_257566830.1 glycosyltransferase -
  JIX55_RS32760 (JIX55_32760) - 7336289..7338388 (+) 2100 WP_257566831.1 ATP-binding protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13403.41 Da        Isoelectric Point: 4.5642

>NTDB_id=616945 JIX55_RS32745 WP_257566828.1 7333334..7333708(+) (chiS) [Streptomyces sp. DSM 40750]
MAHVLIADDDADIRDLVAFKLTQSGHQVTAVEDGMAALRAAREQPVDLALLDIRMPGMSGLDVCRELRTAPGTAMLPVIM
ITARSQEGDVEVGFAAGADDYIIKPFSPRELSSRVTALLNRVER

Nucleotide


Download         Length: 375 bp        

>NTDB_id=616945 JIX55_RS32745 WP_257566828.1 7333334..7333708(+) (chiS) [Streptomyces sp. DSM 40750]
ATGGCCCACGTCCTGATAGCCGACGACGACGCGGACATCCGGGATCTGGTGGCGTTCAAGCTGACCCAGAGCGGTCACCA
GGTCACGGCCGTGGAGGACGGCATGGCCGCGCTCCGGGCGGCGCGTGAGCAGCCCGTGGACCTGGCCCTGCTCGACATAC
GGATGCCGGGGATGTCCGGCCTGGACGTCTGCCGGGAGCTGCGGACGGCCCCCGGGACCGCGATGCTCCCCGTGATCATG
ATCACCGCGCGATCCCAGGAAGGGGACGTGGAGGTCGGCTTCGCGGCGGGCGCCGACGACTACATCATCAAGCCCTTCAG
CCCACGGGAGCTGTCCAGCCGGGTCACCGCCCTGCTCAACCGGGTGGAGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

45.299

94.355

0.427
  vicR Streptococcus mutans UA159

40.65

99.194

0.403
  pilH Synechocystis sp. PCC 6803

40.336

95.968

0.387
  scnR Streptococcus mutans UA159

39.167

96.774

0.379
  micA Streptococcus pneumoniae Cp1015

38.843

97.581

0.379
  ciaR Streptococcus pneumoniae R6

38.017

97.581

0.371
  ciaR Streptococcus pneumoniae Rx1

38.017

97.581

0.371
  ciaR Streptococcus pneumoniae D39

38.017

97.581

0.371
  ciaR Streptococcus pneumoniae TIGR4

38.017

97.581

0.371
  covR Lactococcus lactis subsp. lactis strain DGCC12653

37.5

96.774

0.363
  ciaR Streptococcus mutans UA159

37.19

97.581

0.363