Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LJA36_RS18620 Genome accession   NZ_CP085282
Coordinates   3852129..3852737 (-) Length   202 a.a.
NCBI ID   WP_015417702.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3847129..3857737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS18600 dnaD 3847365..3848063 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  LJA36_RS18605 nth 3848082..3848741 (+) 660 WP_007612187.1 endonuclease III -
  LJA36_RS18610 - 3848738..3849229 (+) 492 WP_039254733.1 YpoC family protein -
  LJA36_RS18615 - 3849307..3852090 (-) 2784 WP_039254735.1 PBP1A family penicillin-binding protein -
  LJA36_RS18620 recU 3852129..3852737 (-) 609 WP_015417702.1 Holliday junction resolvase RecU Machinery gene
  LJA36_RS18625 - 3852779..3853741 (+) 963 WP_015417701.1 DUF2515 domain-containing protein -
  LJA36_RS18630 sspM 3853785..3853889 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  LJA36_RS18635 - 3854096..3854341 (+) 246 WP_012117836.1 DUF5446 family protein -
  LJA36_RS18640 - 3854387..3854755 (+) 369 WP_007409492.1 YppE family protein -
  LJA36_RS18645 - 3854794..3854976 (-) 183 WP_003153532.1 YppF family protein -
  LJA36_RS18650 - 3855163..3855597 (+) 435 WP_007409493.1 YppG family protein -
  LJA36_RS18655 - 3855627..3856040 (-) 414 WP_039254739.1 hypothetical protein -
  LJA36_RS18660 - 3856179..3856685 (+) 507 WP_012117833.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23675.77 Da        Isoelectric Point: 9.5779

>NTDB_id=616934 LJA36_RS18620 WP_015417702.1 3852129..3852737(-) (recU) [Bacillus amyloliquefaciens strain TPS17]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLHNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=616934 LJA36_RS18620 WP_015417702.1 3852129..3852737(-) (recU) [Bacillus amyloliquefaciens strain TPS17]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCCACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCATAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

89.95

98.515

0.886