Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LJA36_RS17555 Genome accession   NZ_CP085282
Coordinates   3607395..3608195 (+) Length   266 a.a.
NCBI ID   WP_015417798.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602395..3613195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS17535 - 3602517..3603362 (+) 846 WP_007612503.1 TlyA family RNA methyltransferase -
  LJA36_RS17540 argR 3603459..3603908 (+) 450 WP_003153173.1 transcriptional regulator ArgR -
  LJA36_RS17545 recN 3603940..3605670 (+) 1731 WP_015417799.1 DNA repair protein RecN Machinery gene
  LJA36_RS17550 spoIVB 3605834..3607114 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  LJA36_RS17555 spo0A 3607395..3608195 (+) 801 WP_015417798.1 sporulation transcription factor Spo0A Regulator
  LJA36_RS17560 alr 3608344..3609525 (-) 1182 WP_012117960.1 alanine racemase -
  LJA36_RS17565 - 3609701..3609913 (-) 213 WP_003153181.1 spore germination protein -
  LJA36_RS17570 - 3610039..3610251 (-) 213 WP_007408362.1 spore germination protein -
  LJA36_RS17575 - 3610377..3611495 (-) 1119 WP_032863662.1 NADH-dependent flavin oxidoreductase -
  LJA36_RS17580 - 3611589..3611726 (-) 138 WP_014470646.1 hypothetical protein -
  LJA36_RS17585 - 3612023..3612655 (-) 633 WP_007408365.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29657.13 Da        Isoelectric Point: 6.1630

>NTDB_id=616933 LJA36_RS17555 WP_015417798.1 3607395..3608195(+) (spo0A) [Bacillus amyloliquefaciens strain TPS17]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRNQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=616933 LJA36_RS17555 WP_015417798.1 3607395..3608195(+) (spo0A) [Bacillus amyloliquefaciens strain TPS17]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCAGATGTGCTCG
TTTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGGGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCGC
CGTCTGCGCAAAGCAGCATTATCCGCAACCAGCCTGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACTGCAAGCCGTGTAGAACGGG
CCATCCGGCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATCGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAGCCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951