Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LJA36_RS17050 Genome accession   NZ_CP085282
Coordinates   3522149..3522916 (+) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3517149..3527916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS17020 - 3517432..3519564 (+) 2133 WP_007408284.1 HD family phosphohydrolase -
  LJA36_RS17025 ybeY 3519565..3520038 (+) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  LJA36_RS17030 - 3520019..3520393 (+) 375 WP_003152974.1 diacylglycerol kinase family protein -
  LJA36_RS17035 - 3520517..3520927 (+) 411 WP_003152976.1 cytidine deaminase -
  LJA36_RS17040 era 3520908..3521813 (+) 906 WP_007408285.1 GTPase Era -
  LJA36_RS17045 - 3521969..3522112 (+) 144 WP_007408286.1 YqzL family protein -
  LJA36_RS17050 recO 3522149..3522916 (+) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  LJA36_RS17055 glyQ 3523218..3524105 (+) 888 WP_040237913.1 glycine--tRNA ligase subunit alpha -
  LJA36_RS17060 glyS 3524098..3526137 (+) 2040 WP_015417840.1 glycine--tRNA ligase subunit beta -
  LJA36_RS17065 ccpN 3526238..3526876 (+) 639 WP_003152989.1 transcriptional regulator CcpN -
  LJA36_RS17070 - 3526902..3527714 (+) 813 WP_015417839.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=616925 LJA36_RS17050 WP_007408287.1 3522149..3522916(+) (recO) [Bacillus amyloliquefaciens strain TPS17]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=616925 LJA36_RS17050 WP_007408287.1 3522149..3522916(+) (recO) [Bacillus amyloliquefaciens strain TPS17]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATATGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89