Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SANR_RS09225 Genome accession   NC_022239
Coordinates   1893800..1894291 (-) Length   163 a.a.
NCBI ID   WP_003026323.1    Uniprot ID   I0SA12
Organism   Streptococcus anginosus C238     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1888800..1899291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS09210 (SANR_1786) - 1891707..1892651 (+) 945 WP_003030529.1 magnesium transporter CorA family protein -
  SANR_RS09215 (SANR_1787) - 1892667..1893344 (+) 678 WP_003037754.1 DUF1129 domain-containing protein -
  SANR_RS09220 (SANR_1788) rpsR 1893524..1893763 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  SANR_RS09225 (SANR_1789) ssb 1893800..1894291 (-) 492 WP_003026323.1 single-stranded DNA-binding protein Machinery gene
  SANR_RS09230 (SANR_1790) rpsF 1894304..1894594 (-) 291 WP_003026325.1 30S ribosomal protein S6 -
  SANR_RS09235 (SANR_1791) - 1894862..1895905 (+) 1044 WP_020999819.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  SANR_RS09240 (SANR_1792) - 1895902..1896807 (+) 906 WP_020999820.1 phosphodiester glycosidase family protein -
  SANR_RS09245 (SANR_1793) - 1896782..1897192 (+) 411 WP_020999821.1 hypothetical protein -
  SANR_RS09250 (SANR_1794) - 1897428..1898030 (-) 603 WP_003037675.1 histidine phosphatase family protein -
  SANR_RS09255 - 1898027..1898619 (-) 593 Protein_1822 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18203.89 Da        Isoelectric Point: 4.9008

>NTDB_id=61690 SANR_RS09225 WP_003026323.1 1893800..1894291(-) (ssb) [Streptococcus anginosus C238]
MINNVVLVGRMTRDAELRYTPQNQAVATFTLAVNRNFKNQSGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRASREGQSSGGYTSNNFGNSSSNFGNSTSANQVPNFSRDENPFGNTNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=61690 SANR_RS09225 WP_003026323.1 1893800..1894291(-) (ssb) [Streptococcus anginosus C238]
ATGATAAATAACGTTGTACTTGTGGGTCGGATGACCCGAGATGCCGAACTTCGCTATACTCCGCAAAATCAAGCGGTTGC
AACTTTTACTCTTGCTGTCAATCGCAACTTTAAAAATCAAAGTGGCGAGCGAGAAGCAGATTTCATTAACGTTGTAATTT
GGCGCCAGCAGGCAGAAAATCTTGCAAATTGGGCTAAAAAAGGAGCTCTCATCGGAATTACTGGTCGGATTCAGACACGT
AACTACGAAAACCAGCAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCTGACAATTTCCAACTGCTAGAAAGTCGTGC
CAGCCGTGAAGGTCAATCTTCTGGTGGCTACACTTCTAATAATTTCGGAAATTCATCATCCAACTTTGGGAACTCAACTT
CTGCCAATCAAGTACCCAACTTTTCTCGTGATGAAAATCCATTTGGTAATACCAATCCAATGGACATCTCAGATGACGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SA12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.386

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.607
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

65.031

0.368
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.871

0.368

Multiple sequence alignment