Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   LJA36_RS11170 Genome accession   NZ_CP085282
Coordinates   2358611..2359756 (-) Length   381 a.a.
NCBI ID   WP_033574379.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2353611..2364756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS11125 speE 2353909..2354739 (+) 831 WP_003151052.1 spermidine synthase -
  LJA36_RS11130 speB 2354798..2355670 (+) 873 WP_040238749.1 agmatinase -
  LJA36_RS11135 - 2355838..2356056 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  LJA36_RS11140 - 2356647..2357159 (-) 513 WP_031304384.1 stage II sporulation protein M -
  LJA36_RS11145 - 2357203..2357484 (-) 282 WP_007407643.1 hypothetical protein -
  LJA36_RS11150 - 2357670..2357855 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  LJA36_RS11155 - 2357890..2358093 (-) 204 WP_007407641.1 hypothetical protein -
  LJA36_RS11160 - 2358107..2358310 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  LJA36_RS11165 phrF 2358508..2358627 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LJA36_RS11170 rapF 2358611..2359756 (-) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  LJA36_RS11175 - 2359987..2361342 (+) 1356 WP_040238751.1 YncE family protein -
  LJA36_RS11180 - 2361382..2362758 (+) 1377 WP_040238753.1 YncE family protein -
  LJA36_RS11185 - 2362765..2363277 (-) 513 Protein_2163 bacteriocin biosynthesis protein AlbG -
  LJA36_RS11190 - 2363431..2363859 (+) 429 WP_007407634.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45571.63 Da        Isoelectric Point: 4.5769

>NTDB_id=616899 LJA36_RS11170 WP_033574379.1 2358611..2359756(-) (rapF) [Bacillus amyloliquefaciens strain TPS17]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAEEAEDSLYIVEYEFLESLYVGEPDEEAI
MECFDFLRDKSMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=616899 LJA36_RS11170 WP_033574379.1 2358611..2359756(-) (rapF) [Bacillus amyloliquefaciens strain TPS17]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGCCATAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAACAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAGGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGACAATATCATGACAAAGGGGTATCTTATGCAGAGG
AGGCAGAAGATTCCTTATATATAGTGGAGTATGAATTTTTGGAATCTTTGTATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATCGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.842

99.738

0.567