Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JIX55_RS05855 Genome accession   NZ_CP102513
Coordinates   1255694..1256743 (-) Length   349 a.a.
NCBI ID   WP_257562155.1    Uniprot ID   -
Organism   Streptomyces sp. DSM 40750     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1250694..1261743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIX55_RS05850 (JIX55_05850) - 1254015..1255535 (-) 1521 WP_257562154.1 glycoside hydrolase family 43 protein -
  JIX55_RS05855 (JIX55_05855) cytR 1255694..1256743 (-) 1050 WP_257562155.1 LacI family DNA-binding transcriptional regulator Regulator
  JIX55_RS05860 (JIX55_05860) - 1257019..1258752 (+) 1734 WP_257562156.1 cellulase family glycosylhydrolase -
  JIX55_RS05865 (JIX55_05865) - 1258928..1260067 (+) 1140 WP_257562157.1 LacI family DNA-binding transcriptional regulator -
  JIX55_RS05870 (JIX55_05870) - 1260204..1261727 (+) 1524 WP_257562158.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37554.42 Da        Isoelectric Point: 5.2699

>NTDB_id=616893 JIX55_RS05855 WP_257562155.1 1255694..1256743(-) (cytR) [Streptomyces sp. DSM 40750]
MADYAADGPADKNDGRGDTSRPVTIAYIAESAGVSVPTVSKVINGKSGVSADTRARVEELVNRYGYRKPTGANRNNVVEL
VFRELKHMWAVEIIRGVERVARRHRVGVMVSEFGLHDTTAPTWDDTVSRRPNCVLSVAQLSEAEREQLKAKGIPFVVFDP
AVELPDDVPFVGATNYSGGRIATRHLTELGHRRIAMISGPEDQLYCRARLDGYRSAMQSAGLAVDPGTVVHAPLTGEDGY
EAARSLLALPERPTAIFTANDLQALGVYQAAREAGLRIPDDLSVVGFDDLPVVAWVDPPLTTVHQPLTEMAVAATELALT
LGRGEDAPQVGLEIATTLTVRGSTAPPRD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=616893 JIX55_RS05855 WP_257562155.1 1255694..1256743(-) (cytR) [Streptomyces sp. DSM 40750]
TTGGCGGACTACGCGGCTGACGGGCCGGCGGACAAGAACGACGGACGGGGCGACACGTCCCGGCCGGTCACGATCGCGTA
CATCGCCGAGTCGGCGGGGGTGTCGGTCCCGACCGTGTCCAAGGTGATCAACGGCAAGTCGGGCGTCTCCGCGGACACCC
GCGCACGGGTGGAGGAGCTGGTCAACAGGTACGGCTACCGCAAGCCCACCGGCGCCAACCGGAACAACGTCGTGGAACTC
GTGTTCCGCGAGCTCAAGCACATGTGGGCGGTCGAGATCATCCGTGGCGTGGAGCGGGTGGCCCGCCGGCACCGTGTGGG
CGTCATGGTGTCGGAGTTCGGACTGCACGACACCACCGCTCCCACCTGGGACGACACCGTCTCCCGGCGCCCGAACTGCG
TCCTGTCCGTGGCCCAGCTCTCCGAGGCCGAGCGCGAGCAACTCAAGGCGAAGGGTATCCCGTTCGTCGTCTTCGACCCG
GCCGTGGAACTGCCGGACGACGTCCCGTTCGTGGGCGCGACCAACTATTCCGGCGGCCGGATCGCGACGCGTCACCTCAC
CGAACTCGGGCACCGCCGCATCGCCATGATCAGCGGCCCCGAGGACCAGCTGTACTGCCGTGCCCGCCTGGACGGATACC
GCTCCGCGATGCAGTCCGCCGGCCTGGCCGTCGATCCGGGGACCGTGGTGCACGCGCCGCTCACCGGTGAGGACGGCTAC
GAGGCGGCGCGTTCCCTGCTGGCCCTGCCCGAACGCCCGACGGCCATCTTCACCGCCAACGACCTGCAGGCGCTCGGCGT
CTACCAGGCGGCACGCGAGGCCGGCCTGCGTATTCCCGACGACCTGAGCGTCGTCGGCTTCGACGACCTGCCGGTCGTGG
CCTGGGTGGACCCGCCCCTGACCACCGTGCACCAGCCCCTGACCGAGATGGCCGTGGCCGCGACCGAGCTGGCGCTCACG
CTCGGCCGCGGTGAGGACGCGCCCCAGGTCGGGCTGGAGATCGCGACGACCCTGACGGTCCGGGGCAGCACGGCTCCACC
CAGGGACTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(183-344)

Bacterial regulatory proteins, lacI family (LacI)

(24-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.522

98.854

0.361