Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LJA36_RS09205 Genome accession   NZ_CP085282
Coordinates   1969079..1969369 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1964079..1974369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS09190 - 1964301..1965626 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  LJA36_RS09195 - 1965761..1966528 (-) 768 WP_032868379.1 TatD family hydrolase -
  LJA36_RS09200 metG 1966605..1968596 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  LJA36_RS09205 abrB 1969079..1969369 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  LJA36_RS09210 rsmI 1969419..1970300 (-) 882 WP_040238641.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LJA36_RS09215 - 1970275..1970574 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  LJA36_RS09220 - 1970561..1971304 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LJA36_RS09225 yabA 1971365..1971724 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  LJA36_RS09230 ricT 1971739..1972566 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  LJA36_RS09235 holB 1972569..1973558 (-) 990 WP_033575250.1 DNA polymerase III subunit delta' -
  LJA36_RS09240 - 1973570..1974010 (-) 441 WP_004264730.1 DUF327 family protein -
  LJA36_RS09245 darA 1974023..1974352 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=616892 LJA36_RS09205 WP_169510469.1 1969079..1969369(+) (abrB) [Bacillus amyloliquefaciens strain TPS17]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=616892 LJA36_RS09205 WP_169510469.1 1969079..1969369(+) (abrB) [Bacillus amyloliquefaciens strain TPS17]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCAATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979