Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LJA36_RS07635 Genome accession   NZ_CP085282
Coordinates   1643765..1644202 (+) Length   145 a.a.
NCBI ID   WP_015416783.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1638765..1649202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS07620 - 1641624..1641986 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  LJA36_RS07625 hxlA 1642218..1642853 (+) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  LJA36_RS07630 hxlB 1642850..1643407 (+) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  LJA36_RS07635 nucA/comI 1643765..1644202 (+) 438 WP_015416783.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LJA36_RS07640 nin/comJ 1644223..1644621 (+) 399 WP_015416782.1 competence protein ComJ Regulator
  LJA36_RS07645 - 1644662..1646098 (-) 1437 WP_015416781.1 family 1 glycosylhydrolase -
  LJA36_RS07650 - 1646202..1646525 (-) 324 WP_007409357.1 YckD family protein -
  LJA36_RS07655 - 1646597..1647031 (-) 435 WP_033575151.1 RDD family protein -
  LJA36_RS07660 - 1647046..1648182 (-) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16038.34 Da        Isoelectric Point: 8.4850

>NTDB_id=616887 LJA36_RS07635 WP_015416783.1 1643765..1644202(+) (nucA/comI) [Bacillus amyloliquefaciens strain TPS17]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLLKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=616887 LJA36_RS07635 WP_015416783.1 1643765..1644202(+) (nucA/comI) [Bacillus amyloliquefaciens strain TPS17]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTGAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634