Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LJA36_RS07405 Genome accession   NZ_CP085282
Coordinates   1579113..1580066 (-) Length   317 a.a.
NCBI ID   WP_015239156.1    Uniprot ID   A0AAP3YGS2
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1574113..1585066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS07385 - 1574992..1576416 (+) 1425 WP_033575079.1 MDR family MFS transporter -
  LJA36_RS07390 - 1576458..1577402 (-) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  LJA36_RS07395 - 1577424..1578182 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  LJA36_RS07400 - 1578176..1579123 (-) 948 WP_040238557.1 iron chelate uptake ABC transporter family permease subunit -
  LJA36_RS07405 ceuB 1579113..1580066 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  LJA36_RS07410 - 1580480..1581844 (+) 1365 WP_015416811.1 aspartate kinase -
  LJA36_RS07415 - 1581939..1582034 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  LJA36_RS07420 phrC 1582183..1582302 (-) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  LJA36_RS07425 rapC 1582286..1583434 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  LJA36_RS07430 - 1583576..1585009 (-) 1434 WP_162303988.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34945.24 Da        Isoelectric Point: 9.6741

>NTDB_id=616883 LJA36_RS07405 WP_015239156.1 1579113..1580066(-) (ceuB) [Bacillus amyloliquefaciens strain TPS17]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616883 LJA36_RS07405 WP_015239156.1 1579113..1580066(-) (ceuB) [Bacillus amyloliquefaciens strain TPS17]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCGGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTTAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGAATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536