Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   JIX55_RS00015 Genome accession   NZ_CP102513
Coordinates   4318..5520 (+) Length   400 a.a.
NCBI ID   WP_257561142.1    Uniprot ID   -
Organism   Streptomyces sp. DSM 40750     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..10520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIX55_RS00005 (JIX55_00005) - 558..2960 (+) 2403 WP_257561139.1 DEAD/DEAH box helicase -
  JIX55_RS00010 (JIX55_00010) - 3153..3926 (-) 774 WP_257561140.1 hypothetical protein -
  JIX55_RS00015 (JIX55_00015) cqsA 4318..5520 (+) 1203 WP_257561142.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  JIX55_RS00020 (JIX55_00020) - 5660..6223 (-) 564 WP_257561143.1 hypothetical protein -
  JIX55_RS00025 (JIX55_00025) - 6582..7766 (-) 1185 WP_257561144.1 polyprenyl synthetase family protein -
  JIX55_RS00030 (JIX55_00030) - 7951..9030 (-) 1080 WP_257561146.1 terpene synthase family protein -
  JIX55_RS00035 (JIX55_00035) - 9855..9980 (+) 126 Protein_6 AAA family ATPase -
  JIX55_RS00040 (JIX55_00040) - 10044..10475 (-) 432 WP_257561147.1 DUF5958 family protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 43079.27 Da        Isoelectric Point: 6.6583

>NTDB_id=616883 JIX55_RS00015 WP_257561142.1 4318..5520(+) (cqsA) [Streptomyces sp. DSM 40750]
MIEPCAVGSLLPAFVQERVEAFHASGIRGRWAGRHILRGRRLPGPGSTVVDSNDYLRLAGDKRIVDAVTESLDAMRGARL
ASAALLYEEHPQTVLERELAGYLGSQAGVFCQSGYDANVGLLQTLAGPEVPVYVDMLAHMSLWAGAKAAGAPVRPFRHND
TAHLLRRIEEHGPGVIAVDSMYSVCGSLAPLAALCAVAEQTGCVLVVDEAHSLGTHGPAGAGMVAAAGLTKRVHFRTMSL
SKAFAKRAGYITCPDEEFVEYFKMTSYPAVFASTLVPSDLVQISATLDVVRHDEWRRTRLQEVAATLRQGLTSLGYDLRG
SGAHIMSLPTGPDETIIQVRDIMEDHDVFGSVFCPPATPHNRTALRLSLHCDLTDQDVDRIIQASGIVRPLITSPRSLTP

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=616883 JIX55_RS00015 WP_257561142.1 4318..5520(+) (cqsA) [Streptomyces sp. DSM 40750]
ATGATCGAACCTTGTGCCGTTGGCTCGCTGCTGCCGGCGTTCGTCCAGGAGCGGGTGGAGGCTTTCCACGCGAGCGGGAT
TCGGGGGCGGTGGGCGGGTCGGCACATCCTGCGCGGCCGACGCCTGCCGGGGCCGGGCTCCACGGTGGTCGACAGCAACG
ACTACCTGCGCCTGGCCGGCGACAAGCGCATCGTGGACGCCGTGACCGAGTCCCTCGACGCGATGCGGGGGGCGCGGCTG
GCTTCAGCGGCGCTGCTGTATGAGGAGCACCCGCAGACCGTGCTGGAGCGGGAGCTGGCCGGCTACCTCGGTTCGCAGGC
GGGCGTGTTCTGCCAGTCGGGATACGACGCCAACGTGGGGCTGCTGCAAACCCTGGCAGGGCCCGAAGTGCCGGTGTACG
TGGACATGCTGGCTCACATGTCGCTGTGGGCGGGCGCGAAGGCGGCCGGTGCCCCGGTGCGGCCCTTCCGCCACAACGAC
ACCGCCCACCTGCTGCGCCGTATCGAGGAGCACGGCCCCGGGGTGATCGCGGTCGACTCGATGTACAGCGTGTGCGGCAG
CCTCGCGCCGCTGGCCGCGCTGTGCGCCGTCGCCGAGCAGACCGGCTGTGTCCTGGTCGTCGACGAGGCCCACTCGCTGG
GCACCCACGGCCCCGCCGGAGCGGGCATGGTCGCGGCGGCCGGACTGACGAAGCGGGTGCATTTCCGCACGATGAGCCTG
TCGAAGGCGTTCGCGAAACGGGCCGGCTACATCACCTGTCCGGACGAGGAATTCGTCGAGTACTTCAAGATGACCTCCTA
CCCGGCCGTCTTCGCCTCCACCCTGGTGCCGTCCGACCTGGTACAGATCTCCGCCACCCTGGACGTCGTCCGCCACGACG
AATGGCGCCGCACCCGCCTGCAGGAAGTCGCCGCGACCCTGCGGCAAGGCCTCACCAGCCTCGGGTACGACCTGCGGGGT
TCGGGCGCCCACATCATGTCGCTGCCCACCGGCCCGGACGAAACCATCATTCAGGTACGCGACATCATGGAAGACCACGA
CGTGTTCGGATCCGTCTTCTGTCCCCCCGCCACCCCCCACAACCGCACCGCACTGCGGCTCTCCCTGCACTGCGACCTCA
CCGACCAGGACGTGGACCGCATCATCCAGGCCAGCGGGATCGTCCGGCCCCTGATCACCTCGCCCCGCTCACTCACCCCC
TGA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(51-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

42.627

93.25

0.397