Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LJA36_RS05275 Genome accession   NZ_CP085282
Coordinates   1167050..1167841 (-) Length   263 a.a.
NCBI ID   WP_012117114.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162050..1172841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS05235 - 1162315..1162650 (-) 336 WP_007408558.1 SdpI family protein -
  LJA36_RS05240 - 1162736..1163263 (-) 528 WP_015417063.1 SH3 domain-containing protein -
  LJA36_RS05245 - 1163396..1163665 (-) 270 WP_003155492.1 YfhJ family protein -
  LJA36_RS05250 - 1163789..1163941 (+) 153 WP_003155495.1 small, acid-soluble spore protein K -
  LJA36_RS05255 - 1164088..1164999 (+) 912 WP_015417062.1 serine protease -
  LJA36_RS05260 - 1164962..1165351 (+) 390 WP_015417061.1 DUF2606 family protein -
  LJA36_RS05265 - 1165391..1166584 (-) 1194 WP_031378905.1 MFS transporter -
  LJA36_RS05270 - 1166729..1167043 (-) 315 WP_007408553.1 YfhH family protein -
  LJA36_RS05275 recX 1167050..1167841 (-) 792 WP_012117114.1 recombination regulator RecX Regulator
  LJA36_RS05280 - 1167933..1168832 (+) 900 WP_033575004.1 TIGR01777 family oxidoreductase -
  LJA36_RS05285 - 1168890..1169000 (+) 111 WP_003155504.1 YfhE family protein -
  LJA36_RS05290 - 1169071..1169262 (+) 192 WP_003155508.1 YfhD family protein -
  LJA36_RS05295 - 1169302..1169886 (-) 585 WP_015417058.1 nitroreductase -
  LJA36_RS05300 - 1169963..1170847 (-) 885 WP_033575003.1 PhzF family phenazine biosynthesis isomerase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 31004.21 Da        Isoelectric Point: 6.0921

>NTDB_id=616881 LJA36_RS05275 WP_012117114.1 1167050..1167841(-) (recX) [Bacillus amyloliquefaciens strain TPS17]
MPFITKISTQKKNTERFNIFLDEKYAFSVDADVLVRFDLKKGKELDELDILEIQYGDDVKKAFNRAVEFLSYRMRSEKEV
RDHLKKKETPDMVISEVIHKLYDYRYLNDKEFAEAYASTHKKTNGKGPDVLFRELKAKGIDDDTIKETLSAFTFDEQIQE
ALKHIGKILKKDKKLSTKEIRQRAQMQLQRKGFPFDVINAALEQTEYENDDEAEMEALKAHAEKAIRKYRYDGSYESGMK
VKQYLFRKGFSIDDIDQFLQEEE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=616881 LJA36_RS05275 WP_012117114.1 1167050..1167841(-) (recX) [Bacillus amyloliquefaciens strain TPS17]
ATGCCGTTTATTACAAAAATATCGACCCAAAAGAAAAATACCGAGCGCTTCAACATCTTTCTTGATGAGAAATATGCATT
CAGCGTCGACGCCGACGTGCTTGTGCGTTTTGACCTGAAAAAAGGGAAAGAACTGGACGAGCTTGACATTCTTGAAATCC
AGTACGGCGATGACGTAAAAAAAGCCTTTAACCGCGCCGTAGAATTTTTATCATACCGGATGCGCTCTGAAAAAGAAGTC
CGGGATCATCTGAAGAAAAAAGAAACACCGGACATGGTCATTTCTGAAGTCATCCATAAACTGTACGATTACCGCTACTT
AAATGACAAAGAATTTGCGGAAGCCTATGCGAGCACCCACAAAAAAACAAACGGCAAAGGCCCTGACGTCCTGTTCCGCG
AGCTGAAAGCGAAAGGAATAGACGACGATACCATCAAGGAGACGCTCAGTGCGTTTACATTTGATGAGCAAATACAAGAA
GCGCTGAAACATATCGGCAAAATCCTGAAAAAGGACAAAAAGCTGTCCACAAAAGAGATCAGACAGCGGGCGCAGATGCA
GCTTCAGCGAAAAGGTTTCCCTTTCGACGTCATCAATGCCGCTCTGGAACAGACGGAGTATGAAAATGATGATGAAGCCG
AGATGGAAGCTCTGAAGGCTCATGCGGAAAAAGCGATCAGGAAATACCGCTATGACGGCAGCTATGAAAGCGGAATGAAG
GTTAAACAGTACTTATTCAGAAAAGGATTCTCGATTGACGATATTGATCAATTCTTGCAGGAAGAGGAGTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

79.468

100

0.795