Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LJA36_RS03840 Genome accession   NZ_CP085282
Coordinates   902947..903900 (-) Length   317 a.a.
NCBI ID   WP_015417205.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 897947..908900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS03810 - 898101..899087 (-) 987 WP_031378493.1 ABC transporter ATP-binding protein -
  LJA36_RS03815 - 899261..900046 (-) 786 WP_012117278.1 DUF2268 domain-containing protein -
  LJA36_RS03820 fabF 900129..901367 (-) 1239 WP_015417206.1 beta-ketoacyl-ACP synthase II -
  LJA36_RS03825 - 901390..902328 (-) 939 WP_007409122.1 beta-ketoacyl-ACP synthase III -
  LJA36_RS03830 - 902496..902714 (+) 219 WP_007409123.1 hypothetical protein -
  LJA36_RS03835 comZ 902743..902934 (-) 192 WP_003155061.1 ComZ family protein Regulator
  LJA36_RS03840 med 902947..903900 (-) 954 WP_015417205.1 BMP family ABC transporter substrate-binding protein Regulator
  LJA36_RS03845 - 903990..904556 (-) 567 WP_015417204.1 NAD(P) binding enzyme -
  LJA36_RS03850 - 904639..905373 (-) 735 WP_015417203.1 hypothetical protein -
  LJA36_RS03855 - 905634..905819 (+) 186 WP_003155069.1 YjzD family protein -
  LJA36_RS03860 - 905856..906035 (-) 180 WP_003155070.1 YjzC family protein -
  LJA36_RS03865 argF 906111..907082 (-) 972 WP_039252015.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35328.96 Da        Isoelectric Point: 4.6686

>NTDB_id=616873 LJA36_RS03840 WP_015417205.1 902947..903900(-) (med) [Bacillus amyloliquefaciens strain TPS17]
MITRLVMIFSVLLLLSGCAQTPFKGKIEKVGMLFPDTISDLVWGTKGYKGLLAIQSEFNVDVYYKENIRSDEDILKAIDD
FHKKGVNLLYGHGNEYEEIFNMISKDYPDMEFVVANGTAKSDNVTSVHLMGEAMGFFGGMTAAHMSKTNEVGVIASFLWQ
PEVDGFIKGAKYEKPDITVNTEFTDHWDNGNEALHLYEKLKAEGTDVVYPAGDGYNVPVIQQIKKDGLYAIGYVAEQSNL
GKNTVLTSTVQNVDKAYTLIAEQYNKGSLKSGDHNFDFREGVVEMGTFSPLVDKAFQDKISDLVKTYNRTNELPSNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616873 LJA36_RS03840 WP_015417205.1 902947..903900(-) (med) [Bacillus amyloliquefaciens strain TPS17]
TTGATCACCAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGCGGATGCGCACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGAATGCTTTTTCCCGATACCATCAGTGACTTGGTATGGGGCACAAAAGGTTACAAAGGTTTATTAGCGA
TACAATCTGAATTTAACGTTGACGTTTATTATAAAGAAAATATCAGATCCGATGAAGATATTTTAAAAGCGATAGATGAT
TTTCATAAAAAAGGAGTCAATCTTTTATACGGGCACGGAAATGAATACGAGGAAATCTTCAATATGATCAGCAAGGATTA
TCCCGACATGGAATTCGTCGTCGCAAACGGAACGGCGAAAAGCGATAATGTCACAAGCGTTCATCTTATGGGAGAAGCAA
TGGGTTTTTTCGGGGGAATGACAGCCGCCCATATGTCAAAAACCAATGAGGTCGGCGTCATCGCCTCCTTTTTGTGGCAG
CCTGAAGTAGACGGCTTTATCAAAGGGGCGAAATATGAAAAGCCTGATATCACCGTCAATACTGAATTTACGGACCACTG
GGATAACGGCAATGAAGCGCTGCATCTTTACGAGAAGTTAAAAGCGGAAGGCACGGATGTTGTATATCCGGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAAATCAAAAAAGACGGGCTTTACGCCATCGGCTATGTCGCCGAACAATCGAATCTC
GGCAAAAACACGGTGCTGACAAGCACGGTGCAAAACGTAGATAAAGCCTATACATTAATTGCCGAGCAATATAATAAAGG
TTCGCTCAAGAGCGGAGATCACAACTTTGATTTCAGGGAAGGAGTCGTTGAAATGGGGACGTTCAGCCCTCTGGTGGACA
AAGCATTTCAAGACAAAATCTCAGACCTTGTCAAAACGTATAACCGAACAAATGAACTGCCGTCAAATGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

78.233

100

0.782