Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LJA36_RS02180 Genome accession   NZ_CP085282
Coordinates   600414..600698 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 595414..605698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS02160 ade 595520..597253 (-) 1734 WP_039251592.1 adenine deaminase -
  LJA36_RS02165 ktrC 597402..598067 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LJA36_RS02170 - 598108..598935 (-) 828 WP_039251594.1 gamma-glutamylcyclotransferase family protein -
  LJA36_RS02175 - 598937..600241 (-) 1305 WP_007409646.1 ATP-binding protein -
  LJA36_RS02180 abrB 600414..600698 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LJA36_RS02185 mreBH 600969..601976 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  LJA36_RS02190 - 602048..602182 (+) 135 WP_003154559.1 protein YkpC -
  LJA36_RS02195 - 602283..603515 (+) 1233 WP_007409644.1 aminopeptidase -
  LJA36_RS02200 - 603547..604455 (-) 909 WP_039251596.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=616863 LJA36_RS02180 WP_003154557.1 600414..600698(-) (abrB) [Bacillus amyloliquefaciens strain TPS17]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=616863 LJA36_RS02180 WP_003154557.1 600414..600698(-) (abrB) [Bacillus amyloliquefaciens strain TPS17]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543