Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JIX56_RS01045 Genome accession   NZ_CP102512
Coordinates   255319..256299 (-) Length   326 a.a.
NCBI ID   WP_257536843.1    Uniprot ID   -
Organism   Streptomyces sp. CA-210063     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 250319..261299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIX56_RS01035 (JIX56_01035) - 251948..253459 (+) 1512 WP_257536841.1 glycoside hydrolase family 43 protein -
  JIX56_RS01040 (JIX56_01040) - 253498..255252 (+) 1755 WP_257536842.1 cellulase family glycosylhydrolase -
  JIX56_RS01045 (JIX56_01045) cytR 255319..256299 (-) 981 WP_257536843.1 LacI family DNA-binding transcriptional regulator Regulator
  JIX56_RS01050 (JIX56_01050) - 256622..258268 (-) 1647 WP_257536844.1 ricin-type beta-trefoil lectin domain protein -
  JIX56_RS01055 (JIX56_01055) - 258992..259957 (+) 966 WP_257536845.1 glycoside hydrolase family 6 protein -
  JIX56_RS01060 (JIX56_01060) - 260057..260773 (-) 717 WP_257536846.1 hypothetical protein -
  JIX56_RS01065 (JIX56_01065) - 260935..261132 (-) 198 Protein_211 Beta-galactosidase C-terminal domain -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35407.48 Da        Isoelectric Point: 5.6372

>NTDB_id=616787 JIX56_RS01045 WP_257536843.1 255319..256299(-) (cytR) [Streptomyces sp. CA-210063]
MTIAYIAESAGVSVPTVSKVLNGRSGVSDETRTRVQELIHQYGYRKPPKSRSNLVELVFRELESMWAVEIIRGVERVARR
NRIGVLVSEFGLHDTVGMTMDDTVGRRPRCVLSVAQLSEAERDQLAAKGIPFVVFDPIDELPDDVPFVGATNWRGGQAAT
RHLVDLGHRRIAMISGPDHSFCLARLSGYYSALAEAGLPMEPGLVVKTQLTRDHGYVAARALLTGPDRPTAVFTANDMQA
LGVYQAARELGLRIPHDLSLVGFDDVPAVAWMDPPLTTVHQPLAEMAAAATELALALGRGEEVPQVGLEIATTLTVREST
APPKEE

Nucleotide


Download         Length: 981 bp        

>NTDB_id=616787 JIX56_RS01045 WP_257536843.1 255319..256299(-) (cytR) [Streptomyces sp. CA-210063]
GTGACGATCGCTTACATCGCCGAGTCCGCGGGCGTCTCCGTGCCCACCGTGTCGAAGGTGCTCAACGGCCGGTCGGGCGT
GTCGGACGAGACCCGGACCCGCGTCCAGGAACTGATCCATCAGTACGGTTACCGCAAGCCCCCGAAGAGCCGGAGCAACC
TGGTGGAGCTCGTGTTCCGCGAGCTGGAGAGCATGTGGGCCGTGGAGATCATCCGCGGTGTCGAGCGCGTGGCCCGCAGG
AACCGGATCGGTGTGCTGGTGTCGGAGTTCGGTCTCCATGACACGGTGGGCATGACCATGGACGACACGGTCGGCCGGCG
CCCTCGATGTGTCCTGTCGGTCGCGCAGCTCTCGGAAGCCGAGCGGGACCAACTGGCGGCGAAGGGCATCCCGTTCGTCG
TCTTCGACCCGATCGACGAGCTGCCCGACGACGTTCCGTTCGTGGGTGCCACGAACTGGAGGGGCGGTCAGGCGGCGACC
CGGCATCTGGTCGACCTGGGGCACCGGCGCATCGCCATGATCAGCGGGCCTGATCACTCCTTCTGCCTCGCACGGCTGTC
CGGCTACTATTCCGCTCTCGCGGAAGCCGGACTGCCGATGGAACCCGGCCTGGTGGTGAAGACCCAGCTCACCCGCGACC
ACGGTTACGTCGCGGCGCGGGCGCTGCTCACCGGCCCCGATCGCCCCACCGCCGTGTTCACCGCCAACGACATGCAGGCG
CTCGGTGTCTACCAGGCCGCGCGCGAGCTGGGACTGCGCATCCCGCACGATCTCAGCCTGGTGGGTTTCGACGACGTACC
GGCCGTGGCCTGGATGGATCCGCCCTTGACCACGGTCCATCAGCCGCTGGCCGAGATGGCGGCGGCCGCCACCGAGCTGG
CTCTGGCGCTCGGCCGCGGCGAGGAAGTGCCGCAAGTGGGACTGGAGATCGCGACCACCCTCACGGTCCGGGAGAGCACG
GCTCCGCCGAAGGAGGAGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(160-320)

Bacterial regulatory proteins, lacI family (LacI)

(2-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.174

100

0.371