Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   JIW86_RS29510 Genome accession   NZ_CP102509
Coordinates   6369516..6371618 (-) Length   700 a.a.
NCBI ID   WP_257556851.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00162     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6364516..6376618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIW86_RS29490 (JIW86_29490) pgl 6364896..6365675 (-) 780 WP_257556848.1 6-phosphogluconolactonase -
  JIW86_RS29495 (JIW86_29495) opcA 6365794..6366834 (-) 1041 WP_257556849.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  JIW86_RS29500 (JIW86_29500) zwf 6366831..6368357 (-) 1527 WP_215142036.1 glucose-6-phosphate dehydrogenase -
  JIW86_RS29505 (JIW86_29505) tal 6368363..6369481 (-) 1119 WP_257556850.1 transaldolase -
  JIW86_RS29510 (JIW86_29510) recP/tkt 6369516..6371618 (-) 2103 WP_257556851.1 transketolase Machinery gene
  JIW86_RS29515 (JIW86_29515) - 6371875..6372816 (+) 942 WP_215142043.1 heme o synthase -
  JIW86_RS29520 (JIW86_29520) - 6372832..6373194 (+) 363 WP_215142045.1 hypothetical protein -
  JIW86_RS29525 (JIW86_29525) - 6373324..6374418 (+) 1095 WP_257556852.1 amidohydrolase family protein -
  JIW86_RS29530 (JIW86_29530) - 6374447..6375436 (-) 990 WP_257556853.1 COX15/CtaA family protein -
  JIW86_RS29535 (JIW86_29535) - 6375441..6376574 (-) 1134 WP_257556854.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75092.00 Da        Isoelectric Point: 5.7078

>NTDB_id=616770 JIW86_RS29510 WP_257556851.1 6369516..6371618(-) (recP/tkt) [Streptomyces sp. NBC_00162]
MSTKPTTTELEWTELDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPEWVGRDRFVLSAGHSS
LTLYTQLYLGGFGLELDDLKAFRTWGSKTPGHPEYGHTAGVETTTGPLGQGIANAVGMAMASRYERGLFDPEAAQGTSPF
DHMIYAIAGDGCLQEGISHEASALAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTLKRYEAYGWHVQRVAQQENGDLDP
KALHQALIAAKAETGRPSFIAARSIIAWPAPHAQGTEASHGSALGDDEVAATKRVLGFDPEQTFEVSDEVIAHTRKALDR
GREAKAAWEKDFSAWRTANPERAAEFDRINANELPAGWEDKLPSFETGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKNSSFLPVGNPLPEADPYGRTIHFGIREHAMAAAMNGIALHGHTRIYGGTFLVFSDYMRNAVRLSALMHVPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWREILRRHTKVFGKGAPHGLALTRQGVPTYERNE
DAAKGGYVLFEATGADGQSAAAQVLLIGTGSEVHVAVEAREQLQAQGIPTRVVSMPSVEWFEEQDQAYKDSVLPPSVKAR
VAVEAGIGLTWHRYVGDAGRIVSLEHFGASADAKVLFREFGFTPEAVTAAAQASLAAAAR

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=616770 JIW86_RS29510 WP_257556851.1 6369516..6371618(-) (recP/tkt) [Streptomyces sp. NBC_00162]
GTGAGCACCAAGCCGACCACCACAGAGCTCGAGTGGACCGAACTGGACCAGCGGGCCGTCGACACCGCCCGCGTTCTGGC
CGCTGACGCGGTCCAGAAGGTCGGAAACGGCCACCCCGGTACGGCGATGAGCCTGGCCCCCGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCGGCGGACCCCGAGTGGGTGGGCCGCGACCGCTTCGTGCTCTCCGCGGGGCACTCGTCC
CTCACCCTGTACACCCAGCTGTACCTCGGCGGCTTCGGCCTGGAGCTGGACGACCTCAAGGCGTTCCGCACCTGGGGCTC
CAAGACCCCCGGGCACCCGGAGTACGGCCACACGGCCGGCGTGGAGACCACCACCGGCCCGCTGGGCCAGGGCATCGCCA
ACGCGGTGGGCATGGCCATGGCCTCCCGCTACGAGCGCGGCCTGTTCGACCCGGAGGCCGCCCAGGGCACCTCCCCGTTC
GACCACATGATCTACGCGATCGCGGGCGACGGCTGCCTCCAGGAGGGCATCTCCCACGAGGCGTCCGCGCTGGCCGGCCA
CCAGAAGCTCGGCAACCTGGTGCTGCTGTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACGGCCGTCTCCG
AGGACACCCTCAAGCGCTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCGCGCAGCAGGAGAACGGCGACCTCGACCCG
AAGGCGCTGCACCAGGCGCTGATCGCCGCCAAGGCCGAGACCGGGCGCCCGTCCTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCGGCCCCGCACGCCCAGGGCACCGAGGCCTCGCACGGCTCGGCCCTCGGTGACGACGAGGTCGCCGCCACCAAGC
GCGTCCTCGGCTTCGACCCGGAGCAGACCTTCGAGGTCTCCGACGAGGTCATCGCGCACACCCGCAAGGCGCTGGACCGC
GGCCGCGAGGCCAAGGCCGCGTGGGAGAAGGACTTCTCCGCCTGGCGCACCGCCAATCCGGAGCGCGCCGCCGAGTTCGA
CCGCATCAACGCGAACGAGCTGCCCGCGGGCTGGGAGGACAAGCTCCCCTCCTTCGAGACCGGCAAGGGTGTCGCCACCC
GCGCCGCCTCCGGCAAGGTGCTCCAGGCCCTCGGTGCGGTCATCCCGGAGCTGTGGGGCGGCTCGGCCGACCTGGCCGGC
TCCAACAACACCACCATCGACAAGAACTCCTCGTTCCTGCCGGTGGGCAACCCGCTGCCGGAGGCCGACCCGTACGGCCG
CACCATCCACTTCGGCATCCGCGAGCACGCCATGGCCGCGGCCATGAACGGCATCGCCCTGCACGGCCACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTCCGGCTGTCCGCGCTGATGCACGTGCCGGTCACC
TACGTGTGGACGCACGACTCCATCGGTCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTCGCCTCGCTGCG
CGCCATCCCGGGCCTGAACGTCGTCCGCCCGGCCGACGCCAACGAGACCGCCATCGCCTGGCGCGAGATCCTGCGGCGCC
ACACCAAGGTGTTCGGCAAGGGCGCCCCGCACGGCCTGGCGCTGACCCGTCAGGGCGTGCCGACCTACGAGCGCAACGAG
GACGCCGCCAAGGGCGGTTACGTGCTCTTCGAGGCCACGGGCGCCGACGGGCAGAGCGCAGCCGCGCAGGTCCTCCTCAT
CGGCACCGGCTCCGAGGTGCACGTGGCCGTGGAAGCCCGCGAGCAGCTCCAGGCCCAGGGCATCCCCACCCGAGTCGTCT
CGATGCCGTCCGTCGAGTGGTTCGAGGAGCAGGACCAGGCGTACAAGGACAGCGTCCTGCCGCCCTCCGTCAAGGCGCGC
GTCGCGGTCGAGGCGGGCATCGGCCTGACCTGGCACCGCTACGTCGGCGACGCGGGCCGGATCGTGTCGCTGGAGCACTT
CGGTGCCTCGGCCGACGCGAAGGTGCTGTTCCGCGAGTTCGGTTTCACCCCCGAGGCCGTGACCGCCGCAGCCCAGGCCT
CCCTCGCCGCAGCCGCGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(581-687)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-535)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.029

97.714

0.44