Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG333_RS14235 Genome accession   NZ_CP085270
Coordinates   2746011..2747717 (-) Length   568 a.a.
NCBI ID   WP_404468361.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2741011..2752717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG333_RS14205 (LG333_14140) - 2741187..2741429 (+) 243 WP_223489928.1 DUF2627 domain-containing protein -
  LG333_RS14210 (LG333_14145) - 2741888..2742613 (-) 726 WP_404468360.1 glycerophosphodiester phosphodiesterase -
  LG333_RS14215 (LG333_14150) - 2742706..2742861 (+) 156 WP_010194889.1 YycC family protein -
  LG333_RS14220 (LG333_14155) spo0A 2742957..2743748 (-) 792 WP_088018747.1 sporulation transcription factor Spo0A -
  LG333_RS14225 (LG333_14160) spoIVB 2744022..2745317 (-) 1296 WP_223489932.1 SpoIVB peptidase -
  LG333_RS14230 (LG333_14165) - 2745711..2745902 (-) 192 WP_223489934.1 hypothetical protein -
  LG333_RS14235 (LG333_14170) recN 2746011..2747717 (-) 1707 WP_404468361.1 DNA repair protein RecN Machinery gene
  LG333_RS14240 (LG333_14175) ahrC 2747740..2748189 (-) 450 WP_010194884.1 transcriptional regulator AhrC/ArgR -
  LG333_RS14245 (LG333_14180) - 2748282..2749118 (-) 837 WP_404468363.1 TlyA family RNA methyltransferase -
  LG333_RS14250 (LG333_14185) dxs 2749125..2751017 (-) 1893 WP_223489940.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG333_RS14255 (LG333_14190) - 2751040..2751639 (-) 600 WP_223489942.1 hypothetical protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64299.97 Da        Isoelectric Point: 4.9024

>NTDB_id=616766 LG333_RS14235 WP_404468361.1 2746011..2747717(-) (recN) [Sutcliffiella horikoshii strain ABH-536]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDEKHPAYRV
CQELGIEIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLSLLDQFGGAAVQKEL
KEYRNIYSSFKDVEKRLLELTENEQKVAHRLDLLQFQAEEISNAQLTVNEEDELLEERNKISNYERLYQSLNNCYHAMHG
EQKGLDWVGQAMSESEGLEEIDKNLKDVHEIISNSYYQLEELSYRIRDEIDQLEFDPNRLDFIEGRLNEIKQLKRKYGTT
VAEVLEYASKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFDVNMD
VKKEKASGDAVFSKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLDQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQE

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=616766 LG333_RS14235 WP_404468361.1 2746011..2747717(-) (recN) [Sutcliffiella horikoshii strain ABH-536]
ATGATTGCTGAATTAACCATTAAAAATTTTGCTATTATTGAATCCCTTTCTGTTTCTTTTGACAAAGGGTTAACGGTTTT
AACCGGGGAGACCGGAGCGGGTAAATCCATTATCATTGATGCCATCCACTTGCTGGCGGGTGGACGTGGTTCACATGAGT
TCGTCCGTTTCGGTGAAAAACGAGCGGAACTCGAAGGCTTGTTCCTTCTTGAAGATGAGAAGCATCCTGCCTATAGAGTT
TGTCAGGAGCTTGGTATTGAGATAGAAGACGAGATGGTTGTCTTGAGACGGGAAATTCATGCTACAGGCAAAAGTGTTTG
CCGTGTTAATGGAAAGCTTGTCACCATAGCCCTGTTACGGGAAGTCGGTCAGACATTGGTGGACATTCATGGGCAGCACG
AACACCAGGAACTGATGGACCCGGACTTGCATCTTTCGCTTTTAGATCAGTTTGGAGGAGCGGCTGTTCAAAAGGAACTT
AAAGAGTATAGGAACATTTATTCATCTTTTAAGGATGTAGAAAAAAGGCTGCTTGAACTCACGGAAAATGAACAAAAGGT
TGCACATCGCCTTGATTTGTTGCAGTTCCAAGCAGAAGAAATCAGCAATGCGCAATTAACCGTCAATGAAGAAGACGAGC
TGCTCGAGGAACGGAATAAAATCAGTAACTATGAACGACTTTACCAATCGCTCAACAACTGTTACCATGCGATGCACGGC
GAACAAAAGGGACTTGATTGGGTCGGACAAGCCATGTCTGAATCCGAGGGTCTCGAAGAAATCGATAAAAACCTTAAAGA
TGTTCACGAAATCATTTCCAATTCTTATTATCAATTAGAAGAACTATCTTATCGTATTAGAGATGAAATAGATCAGCTTG
AGTTTGATCCAAACCGCCTTGATTTTATTGAAGGAAGACTGAATGAAATCAAACAATTGAAACGGAAATACGGAACTACG
GTTGCTGAAGTCTTAGAATATGCTTCGAAAATAGAAGAGGAGCTAGAGACGCTGCAAAACCGTGATTCGCACATTCACCA
GCTGCAGGAGTCTCTTGAGTCGCTTAAACAAGATCTTGCACTTGAAGCAAAATCGCTTACTGATGCCCGTAGAAAAGCCT
CAGAGAAACTAATGAAGAGCATTCATAAAGAGCTCAAAGACCTGTACTTGGAAAAAGCTATTTTTGATGTGAACATGGAC
GTGAAAAAGGAAAAGGCGTCAGGTGATGCGGTGTTTAGTAAAAACGGCGTGGATGTTGTGGAGTTCTACCTTACAACAAA
CCCGGGGGAACCATTGAAGCCAATGGCAAAAGTAGCTTCAGGCGGGGAACTTTCGAGGATCATGCTTGCATTGAAGAGTA
TCTTCTCAAGACACCAAGGGATCACTTCCATCATTTTTGATGAAGTCGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATTTATCAGGTCTCGGTTGATTCACAAGTCCTTTGTATCTCCCACTTACCTCAAGTTGCTGCGATGTC
AGACACCCATCTATTCATCAGCAAGGAAGTCTCCGGTGAACGCACGAAAACCAAAGTGCGCGGACTGGATCAGGACGAAA
AGGTGCGTGAAATCGGCCGGATGATTTCTGGCGTGGAGATTACTTCGTTGACGAAGGAGCATGCACGCGAGTTGTTGGAG
ATTGCCGGGAGTATTAAGCAGGAGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.93

100

0.606