Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   JIW86_RS12860 Genome accession   NZ_CP102509
Coordinates   2793585..2794376 (+) Length   263 a.a.
NCBI ID   WP_031142326.1    Uniprot ID   A0A919GZ93
Organism   Streptomyces sp. NBC_00162     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2788585..2799376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIW86_RS12845 (JIW86_12845) - 2789016..2789444 (-) 429 WP_257553879.1 DUF6215 domain-containing protein -
  JIW86_RS12850 (JIW86_12850) - 2789567..2792458 (-) 2892 WP_257553880.1 vitamin B12-dependent ribonucleotide reductase -
  JIW86_RS12855 (JIW86_12855) nrdR 2792603..2793115 (-) 513 WP_215144523.1 transcriptional regulator NrdR -
  JIW86_RS12860 (JIW86_12860) dinR/lexA 2793585..2794376 (+) 792 WP_031142326.1 transcriptional repressor LexA Regulator
  JIW86_RS12865 (JIW86_12865) - 2794449..2796419 (-) 1971 WP_215144525.1 ATP-dependent DNA helicase -
  JIW86_RS12870 (JIW86_12870) - 2796472..2798328 (-) 1857 WP_257553881.1 IucA/IucC family protein -
  JIW86_RS12875 (JIW86_12875) - 2798427..2799125 (-) 699 WP_257553882.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28531.32 Da        Isoelectric Point: 7.4240

>NTDB_id=616716 JIW86_RS12860 WP_031142326.1 2793585..2794376(+) (dinR/lexA) [Streptomyces sp. NBC_00162]
MTTTADSATITAQNRSQSRLEPVHAMNDANLNPEAEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=616716 JIW86_RS12860 WP_031142326.1 2793585..2794376(+) (dinR/lexA) [Streptomyces sp. NBC_00162]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGAGGCGGAGCCCGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGGCGGGGTTACCCGCCG
TCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTCGCCCACCAGCTGATGGCCCTGGAGCGGAA
GGGCTTCCTGCGCCGTGACCCGCACCGCCCCCGGGCGTATGAGGTGCGCGGCTCCGACCAGCCCAGCTCGCAGCCTACGG
ACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTCGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGCGACTC
GATGATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGGCGCCAGCCGGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTGGACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGCGACGAGGCGACCATTCTCGGCAAGGTCGTCGCGGTACTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A919GZ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376