Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG273_RS10445 Genome accession   NZ_CP085256
Coordinates   1990534..1992255 (-) Length   573 a.a.
NCBI ID   WP_404459521.1    Uniprot ID   -
Organism   Oceanobacillus kapialis strain ABH-508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985534..1997255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG273_RS10425 (LG273_10390) - 1985937..1986167 (+) 231 WP_404453327.1 DUF2627 domain-containing protein -
  LG273_RS10430 (LG273_10395) - 1986440..1987786 (+) 1347 WP_404453330.1 aspartate kinase -
  LG273_RS10435 (LG273_10400) spo0A 1987874..1988650 (-) 777 WP_379564350.1 sporulation transcription factor Spo0A -
  LG273_RS10440 (LG273_10405) spoIVB 1988927..1990219 (-) 1293 WP_404453333.1 SpoIVB peptidase -
  LG273_RS10445 (LG273_10410) recN 1990534..1992255 (-) 1722 WP_404459521.1 DNA repair protein RecN Machinery gene
  LG273_RS10450 (LG273_10415) ahrC 1992289..1992738 (-) 450 WP_379564357.1 transcriptional regulator AhrC/ArgR -
  LG273_RS10455 (LG273_10420) - 1992790..1993617 (-) 828 WP_379564359.1 TlyA family RNA methyltransferase -
  LG273_RS10460 (LG273_10425) - 1993614..1994228 (-) 615 WP_379564361.1 hypothetical protein -
  LG273_RS10465 (LG273_10430) - 1994906..1995787 (-) 882 WP_379564363.1 polyprenyl synthetase family protein -
  LG273_RS10470 (LG273_10435) - 1995790..1996023 (-) 234 WP_379564365.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64957.16 Da        Isoelectric Point: 4.7602

>NTDB_id=616622 LG273_RS10445 WP_404459521.1 1990534..1992255(-) (recN) [Oceanobacillus kapialis strain ABH-508]
MLTELSIRDFAIIDQISITFHEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGSKKAEIEGLFILEGKNHPIYQV
GKNFGIEISDDQVVLERTITANGKSICRVNSKLVTLGILREFGETLIDIHSQHETQSLMDPESHLELLDLYDPEAMKQSK
TEYSDLYDRLGTLKARYKDLSENEQEMAHRLDLLEFQLKELEQANLEPNEDEVLEEERSSLANFEKIYTALQDAYNALYG
EQKGLEWVNSARNALDVSSDYDAFIKEKSEEISNHYYALEELTFSLRNYSESQHYNPERLNEVEARLNEINRLKKKYGPT
VNDILDYMAKIEEEIEEITNKDSHLAKLADQIEEVEKDAYLEAQQLHDIRIKNAKALETEIKNELKDLYLEKATFSISFQ
HITDYDPESNQRQKLHKNGFDKIRFLISTNAGEPLKDLHKVASGGELSRIMLALKKIFAKHQGVTSVIFDEVDTGVSGRV
AQAIAEKIYQLSSSSQVLCITHLPQVAAMADTHKLIEKAESNNRTSTKVEELSSKEQVVELSRMITGTQLTETAKEHAKE
LLELAVTFKSKNL

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=616622 LG273_RS10445 WP_404459521.1 1990534..1992255(-) (recN) [Oceanobacillus kapialis strain ABH-508]
ATGTTAACGGAATTATCAATTCGGGATTTTGCAATTATTGATCAAATTTCCATAACGTTTCATGAGGGACTTACTGTTTT
GACAGGTGAGACAGGTGCAGGAAAGTCCATTATTATTGATGCAGTTCAACTATTAGCAGGTGGAAGAGGCTCTGTAGAAT
TTGTACGACATGGTTCAAAGAAAGCAGAAATTGAAGGATTATTCATCTTAGAGGGCAAAAATCATCCTATCTATCAAGTA
GGGAAAAATTTTGGCATTGAAATTTCCGATGACCAAGTTGTATTAGAGCGAACCATTACAGCAAACGGCAAAAGTATCTG
CCGCGTTAATAGTAAGCTTGTTACACTGGGAATTCTTCGGGAATTTGGGGAAACGTTAATCGATATTCACAGCCAGCACG
AAACCCAATCTTTAATGGATCCTGAAAGTCATTTAGAATTACTCGACCTCTATGATCCGGAAGCTATGAAGCAATCTAAA
ACAGAATACAGCGATCTTTATGATCGTTTAGGAACACTTAAAGCTCGTTACAAAGATTTAAGTGAAAACGAACAGGAAAT
GGCTCACAGGCTTGATTTGCTTGAATTCCAGCTCAAGGAATTAGAACAAGCGAACCTTGAACCAAACGAAGACGAAGTGC
TTGAAGAAGAGCGCAGTTCATTAGCTAATTTTGAGAAAATTTATACAGCATTGCAGGATGCCTATAACGCCCTATATGGT
GAACAAAAAGGTCTTGAATGGGTAAATAGTGCGCGCAATGCGCTAGATGTAAGTAGTGATTATGATGCGTTTATTAAGGA
AAAATCCGAAGAAATCTCTAATCATTATTATGCACTTGAAGAATTAACCTTTTCATTGCGGAATTATAGCGAATCACAGC
ATTATAACCCGGAAAGACTAAATGAAGTAGAGGCCAGGCTTAATGAAATTAATCGTCTGAAAAAGAAATATGGCCCGACA
GTTAACGATATTCTTGATTATATGGCCAAAATTGAAGAGGAAATCGAAGAAATAACCAATAAGGATTCTCATCTTGCAAA
ATTAGCTGACCAAATTGAAGAAGTAGAAAAGGATGCCTATCTGGAGGCACAGCAATTACATGACATTCGGATCAAAAACG
CAAAAGCATTAGAAACAGAAATTAAAAATGAATTAAAAGATCTTTATCTGGAGAAAGCAACATTTTCTATATCTTTTCAG
CATATTACAGATTATGATCCAGAGTCTAACCAGAGGCAGAAGCTTCATAAAAATGGCTTTGATAAGATCCGTTTCTTAAT
TTCTACAAATGCAGGTGAACCATTGAAGGATCTTCATAAAGTCGCTTCTGGAGGAGAGTTATCTCGTATCATGCTTGCAT
TAAAAAAAATATTTGCCAAGCATCAAGGCGTAACCAGTGTCATTTTTGACGAAGTTGATACAGGTGTAAGTGGACGGGTT
GCACAGGCAATCGCCGAAAAAATTTATCAACTTTCCAGCAGTTCACAGGTACTATGTATTACACACCTACCACAAGTGGC
AGCAATGGCTGATACACACAAATTAATTGAGAAAGCGGAAAGCAATAACCGTACCTCTACAAAAGTTGAAGAATTAAGCT
CAAAAGAGCAAGTAGTAGAGTTAAGCAGAATGATTACCGGAACGCAATTAACCGAAACTGCCAAAGAGCACGCAAAGGAA
TTACTTGAATTAGCTGTCACGTTTAAATCAAAAAATTTATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56

100

0.562