Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   LG298_RS19920 Genome accession   NZ_CP085255
Coordinates   3933759..3934829 (-) Length   356 a.a.
NCBI ID   WP_404322380.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3928759..3939829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS19875 (LG298_19725) - 3929253..3930047 (+) 795 WP_048008256.1 YqhG family protein -
  LG298_RS19880 (LG298_19730) - 3930091..3930276 (-) 186 WP_035329975.1 YqzE family protein -
  LG298_RS19885 (LG298_19735) - 3930355..3930852 (-) 498 WP_283934939.1 shikimate kinase -
  LG298_RS19890 (LG298_19740) comGG 3930865..3931248 (-) 384 WP_226618337.1 competence type IV pilus minor pilin ComGG -
  LG298_RS19895 (LG298_19745) comGF 3931238..3931654 (-) 417 WP_197213507.1 competence type IV pilus minor pilin ComGF -
  LG298_RS19900 (LG298_19750) - 3931668..3931997 (-) 330 WP_404322377.1 phosphatase -
  LG298_RS19905 (LG298_19755) comGD 3931981..3932418 (-) 438 WP_404322378.1 competence type IV pilus minor pilin ComGD -
  LG298_RS19910 (LG298_19760) comGC 3932418..3932741 (-) 324 WP_197247508.1 competence type IV pilus major pilin ComGC -
  LG298_RS19915 (LG298_19765) comGB 3932741..3933772 (-) 1032 WP_404322379.1 competence type IV pilus assembly protein ComGB -
  LG298_RS19920 (LG298_19770) comGA 3933759..3934829 (-) 1071 WP_404322380.1 competence type IV pilus ATPase ComGA Machinery gene
  LG298_RS19930 (LG298_19780) - 3935099..3935452 (-) 354 WP_226618333.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  LG298_RS19935 (LG298_19785) - 3935699..3936397 (+) 699 WP_404322381.1 helix-turn-helix transcriptional regulator -
  LG298_RS19940 (LG298_19790) - 3936550..3936795 (+) 246 WP_009332938.1 DUF2626 domain-containing protein -
  LG298_RS19945 (LG298_19795) - 3936830..3937900 (-) 1071 WP_404322382.1 class I SAM-dependent methyltransferase -
  LG298_RS19950 (LG298_19800) - 3938104..3938739 (-) 636 WP_404322383.1 MBL fold metallo-hydrolase -
  LG298_RS19955 (LG298_19805) - 3938827..3939306 (+) 480 WP_197247500.1 hypothetical protein -
  LG298_RS19960 (LG298_19810) - 3939432..3939605 (+) 174 WP_048008269.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40151.36 Da        Isoelectric Point: 8.3383

>NTDB_id=616586 LG298_RS19920 WP_404322380.1 3933759..3934829(-) (comGA) [Cytobacillus firmus strain ABH-509]
MSIIERLAERIIKDAVRSHASDIHIIPRRKDTLIQLRFGSQLTPRLYLPKEECDRLISHFKFTASMDIGEKRRPQSGAYS
LEVDGQMIGLRFSTLPSSHSESLVIRILPQQEQIPFYQISLFPDMTRKMLALLKHAHGLIIFTGPTGSGKTTTLYSLLNE
TSHMFHRNVITLEDPIEKENDLVLQVQVNEKAGVSYSAGLKAILRHDPDIIMVGEIRDAETAKIAVRAALTGHLVLSTMH
TRDAEGAVYRLAEFGVNMLEIEQTLVAVTAQRLVELNCPYCEKECSPFCYGYGRWKRASVFELLAGRALNASIKKARGES
SHVKYRTLKEVITKGIVLGYIKDTEYSRWVHDDGEA

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=616586 LG298_RS19920 WP_404322380.1 3933759..3934829(-) (comGA) [Cytobacillus firmus strain ABH-509]
TTGAGTATAATTGAAAGATTGGCAGAACGAATTATTAAAGACGCGGTCAGAAGCCATGCTTCCGACATCCACATCATTCC
CCGAAGAAAAGACACACTCATTCAGCTGAGGTTTGGCAGCCAATTGACCCCAAGGCTTTATCTTCCCAAAGAAGAGTGTG
ACAGATTGATTTCCCATTTTAAATTTACAGCATCGATGGATATTGGTGAAAAAAGAAGGCCGCAGAGCGGTGCATACTCA
CTTGAAGTAGACGGACAAATGATTGGCCTGCGCTTTTCAACCCTCCCATCAAGCCACAGCGAAAGCCTCGTTATCAGAAT
CCTTCCCCAGCAGGAACAAATTCCTTTTTACCAAATCAGCCTTTTTCCAGACATGACAAGAAAAATGCTGGCACTGCTGA
AGCATGCTCATGGTTTGATTATTTTTACTGGCCCGACCGGCAGCGGTAAAACCACAACTTTGTATTCCCTTCTGAATGAA
ACCTCCCATATGTTCCATCGCAATGTCATCACCCTGGAAGATCCCATTGAAAAAGAGAATGACTTAGTTCTTCAAGTCCA
AGTGAATGAGAAAGCGGGCGTGTCTTATTCTGCAGGCTTAAAAGCAATCCTTCGCCATGACCCCGATATCATTATGGTCG
GTGAAATCCGGGATGCGGAAACGGCGAAGATTGCAGTTAGAGCAGCTCTCACCGGTCACCTTGTTTTAAGCACCATGCAT
ACCCGGGATGCCGAGGGGGCTGTTTACCGTTTAGCTGAGTTTGGAGTGAACATGCTGGAAATTGAGCAGACTTTGGTGGC
GGTCACCGCACAGCGCCTCGTCGAATTGAATTGTCCATATTGTGAAAAGGAATGCTCCCCATTCTGCTATGGATATGGCA
GGTGGAAAAGGGCGAGTGTGTTTGAATTGCTCGCAGGAAGGGCGCTCAATGCCTCCATAAAGAAGGCAAGAGGGGAAAGC
AGCCATGTTAAGTATCGAACACTGAAGGAAGTCATAACTAAAGGGATTGTTCTAGGCTATATAAAGGATACAGAGTACAG
CAGGTGGGTGCATGACGATGGAGAAGCATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.337

100

0.553
  pilB Glaesserella parasuis strain SC1401

39.714

98.315

0.39