Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG298_RS19690 Genome accession   NZ_CP085255
Coordinates   3892200..3893882 (-) Length   560 a.a.
NCBI ID   WP_197213549.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3887200..3898882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS19670 (LG298_19520) - 3888950..3889186 (+) 237 WP_048008222.1 DUF2627 domain-containing protein -
  LG298_RS19675 (LG298_19525) - 3889204..3889344 (+) 141 WP_404322365.1 YycC family protein -
  LG298_RS19680 (LG298_19530) spo0A 3889627..3890415 (-) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  LG298_RS19685 (LG298_19535) spoIVB 3890728..3892017 (-) 1290 WP_163143354.1 SpoIVB peptidase -
  LG298_RS19690 (LG298_19540) recN 3892200..3893882 (-) 1683 WP_197213549.1 DNA repair protein RecN Machinery gene
  LG298_RS19695 (LG298_19545) ahrC 3893968..3894417 (-) 450 WP_009332889.1 transcriptional regulator AhrC/ArgR -
  LG298_RS19700 (LG298_19550) - 3894590..3895435 (-) 846 WP_197213547.1 TlyA family RNA methyltransferase -
  LG298_RS19705 (LG298_19555) dxs 3895439..3897331 (-) 1893 WP_404322366.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG298_RS19710 (LG298_19560) - 3897701..3898594 (-) 894 WP_226618344.1 polyprenyl synthetase family protein -
  LG298_RS19715 (LG298_19565) xseB 3898597..3898830 (-) 234 WP_048008230.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63215.26 Da        Isoelectric Point: 5.2235

>NTDB_id=616585 LG298_RS19690 WP_197213549.1 3892200..3893882(-) (recN) [Cytobacillus firmus strain ABH-509]
MLNEITIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKTGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVTALKKDLVVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTTVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=616585 LG298_RS19690 WP_197213549.1 3892200..3893882(-) (recN) [Cytobacillus firmus strain ABH-509]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAAGCTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAATTTGGGATAGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATCGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCTCTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACCTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCACACCGGCTTGATTTAATCCAATTTCAGCTTGATGAAATCCAGTCAGCACAGCTGAAATTGAATGAAGATGAGGACC
TGATTGAAGAAAAGAGAAAGCTATCCAATTTTGAACGTATTTTTGACTCAGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTCGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAATTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATTTGCTTGAAGATGCGGCCAGTTCCCTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGTCTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAAGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTACTGCCCTGAAAAAAGACCTTGTGGTTGAAGGGGAAGAACTGAGCAAGCTGCGGAGAAAATCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGATTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGCTCAA
GCCTCTGTCTAAGATTGCATCGGGAGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAAGTGCTTTGCATCTCTCACCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGACGGACCAAAACTACAGTGAAGCCTCTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGTGTGGAAATTACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.634