Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LG298_RS07315 Genome accession   NZ_CP085255
Coordinates   1386085..1387902 (+) Length   605 a.a.
NCBI ID   WP_048010949.1    Uniprot ID   A0AA46SL18
Organism   Cytobacillus firmus strain ABH-509     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381085..1392902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS07290 (LG298_07210) - 1381436..1381624 (-) 189 WP_048010953.1 hypothetical protein -
  LG298_RS07295 (LG298_07215) - 1381869..1382444 (+) 576 WP_048010952.1 GNAT family N-acetyltransferase -
  LG298_RS07300 (LG298_07220) spxA 1382921..1383316 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  LG298_RS07305 (LG298_07225) mecA 1383664..1384329 (+) 666 WP_404323691.1 adaptor protein MecA -
  LG298_RS07310 (LG298_07230) - 1384771..1385961 (+) 1191 WP_404323692.1 competence protein CoiA -
  LG298_RS07315 (LG298_07235) pepF 1386085..1387902 (+) 1818 WP_048010949.1 oligoendopeptidase F Regulator
  LG298_RS07320 (LG298_07240) - 1388420..1389289 (-) 870 WP_197217035.1 ClpXP adapter SpxH family protein -
  LG298_RS07325 (LG298_07245) - 1389292..1389696 (-) 405 WP_048010947.1 globin -
  LG298_RS07330 (LG298_07250) - 1389944..1390585 (-) 642 WP_404323693.1 lytic transglycosylase domain-containing protein -
  LG298_RS07335 (LG298_07255) - 1390618..1391208 (-) 591 WP_404323695.1 CYTH domain-containing protein -
  LG298_RS07340 (LG298_07260) - 1391407..1391784 (+) 378 WP_048010944.1 hypothetical protein -
  LG298_RS07345 (LG298_07265) - 1391904..1392542 (+) 639 WP_048010943.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69929.42 Da        Isoelectric Point: 4.9923

>NTDB_id=616574 LG298_RS07315 WP_048010949.1 1386085..1387902(+) (pepF) [Cytobacillus firmus strain ABH-509]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDKIKNLYSEAASALAYIVPELLAEDEEKIAGYLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLKEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=616574 LG298_RS07315 WP_048010949.1 1386085..1387902(+) (pepF) [Cytobacillus firmus strain ABH-509]
ATGGCTAATGAAACGACTGTAAAGAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGATGAGTGGAACAAGGAATACAGTGAAGTTCAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGAGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAAAATTAAAAATTTGTA
TTCGGAAGCTGCTAGTGCACTTGCTTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCAGGCTATTTGA
AGGAAAAAACCGAGTTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGAATGCTGAATAATGCGGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTTGAAAGTG
ACGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGTAATACATTTGCCAGCACT
CTAAGCGGAAACGTAAAAAAAGATAACTTCAACGCTAAGATCCGGAATTATGACTCCGCGCGTCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAATCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCATCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAAGCAAAAGATCTGATTTTAAAAGGATTAAAGCCGCTTGGTGAAGACTATTTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTGGATGTTCATGAGAATAAGGGCAAAAGGAGCGGTGCTTATTCTTCGGGAACATATG
GCACCAACCCTTATATACTAATGAACTGGCAGGATAATGTGAACAACTTATTTACTCTTGCTCATGAATTTGGCCATTCG
GTACACAGCTATTACACAAGAAAATATCAGCCATACCCTTATGGAAACTACTCAATTTTTGTTGCAGAGGTTGCCTCGAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCACAA
AACAATGAAGCCTTGACTGCTGATTCATTGACTAAAGAATATTATGAACTTAATAAAAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCGGACTACCCAATTGAAGTACTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAAAGAAATGGAAAACTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486