Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LG298_RS07190 Genome accession   NZ_CP085255
Coordinates   1357893..1358849 (+) Length   318 a.a.
NCBI ID   WP_404323686.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352893..1363849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS07170 (LG298_07085) clpB 1353098..1355695 (+) 2598 WP_404323684.1 ATP-dependent chaperone ClpB -
  LG298_RS07175 (LG298_07090) - 1355765..1355956 (-) 192 WP_048010975.1 DUF2929 family protein -
  LG298_RS07180 (LG298_07095) - 1356138..1356875 (+) 738 WP_404323685.1 serine aminopeptidase domain-containing protein -
  LG298_RS07185 (LG298_07100) - 1356956..1357783 (+) 828 WP_250802021.1 hypothetical protein -
  LG298_RS07190 (LG298_07105) med 1357893..1358849 (+) 957 WP_404323686.1 BMP family ABC transporter substrate-binding protein Regulator
  LG298_RS07195 (LG298_07110) comZ 1358879..1359067 (+) 189 WP_197245493.1 ComZ family protein Regulator
  LG298_RS07200 (LG298_07115) - 1359124..1359510 (-) 387 WP_404323688.1 hypothetical protein -
  LG298_RS07205 (LG298_07120) - 1359726..1360658 (+) 933 WP_250802023.1 beta-ketoacyl-ACP synthase III -
  LG298_RS07210 (LG298_07125) fabF 1360956..1362194 (+) 1239 WP_163143789.1 beta-ketoacyl-ACP synthase II -
  LG298_RS07215 (LG298_07130) - 1362433..1363098 (+) 666 WP_053071383.1 DUF2268 domain-containing putative Zn-dependent protease -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35542.18 Da        Isoelectric Point: 4.4450

>NTDB_id=616569 LG298_RS07190 WP_404323686.1 1357893..1358849(+) (med) [Cytobacillus firmus strain ABH-509]
MHKTLKKLGILLLCLLLLASCRQPMSAGKLEKAGLLVPDTVNDQVWGTKGYKGMLKIQSHYDIEVYYKEGMNSEMVVERA
VKEFDQKGVNLIFGHGNEYAAYFNNISKKYPDIHFVSFNGDAQNENTTSLNFEAYAMGFFGGMVAGHMTKTNNVGILAAF
EWQPEVEGFYEGANYINDNVNVQIQYVGNWDNDNKAIALLDKLIANKTDVVYPAGDGYNVPVIEKLKEEGLYAIGYISDQ
SDLGESVVLTSTIQHVDVLYELVAEKYNEGELESGNLSFDFEDEVISLGKFSPDVDVEFKKELNAVIENYKKTGKLPE

Nucleotide


Download         Length: 957 bp        

>NTDB_id=616569 LG298_RS07190 WP_404323686.1 1357893..1358849(+) (med) [Cytobacillus firmus strain ABH-509]
ATGCATAAGACATTAAAGAAATTAGGGATCCTTCTTTTGTGCCTTCTTTTATTGGCCTCCTGCAGACAGCCGATGTCTGC
AGGAAAACTTGAGAAAGCTGGATTATTAGTGCCCGATACTGTCAATGACCAAGTATGGGGGACCAAAGGCTATAAAGGCA
TGCTAAAGATTCAATCCCATTATGATATTGAGGTTTATTATAAAGAAGGAATGAATTCAGAGATGGTTGTTGAAAGAGCA
GTTAAAGAGTTTGACCAAAAAGGTGTAAACCTGATCTTTGGACATGGCAATGAATACGCTGCATACTTTAATAACATCTC
AAAAAAATATCCTGACATTCACTTTGTCAGCTTTAATGGTGACGCCCAAAATGAAAACACCACCAGTTTGAACTTTGAAG
CATATGCCATGGGTTTCTTCGGAGGCATGGTTGCAGGACATATGACGAAAACGAATAATGTAGGAATACTGGCGGCTTTT
GAATGGCAGCCGGAAGTAGAAGGTTTTTATGAAGGTGCAAACTATATCAATGATAATGTAAACGTGCAGATCCAATATGT
CGGCAACTGGGACAATGATAACAAAGCCATCGCTCTTTTGGACAAACTTATTGCCAATAAGACAGATGTTGTATATCCGG
CCGGAGATGGGTATAATGTTCCTGTTATCGAAAAGCTGAAAGAAGAAGGGCTCTACGCCATCGGCTATATTTCCGATCAG
TCTGATTTGGGTGAATCAGTCGTCCTGACCAGTACAATTCAGCATGTAGATGTTTTATATGAACTGGTGGCAGAAAAATA
TAACGAAGGCGAGCTTGAATCAGGAAATCTATCCTTCGATTTTGAGGATGAAGTGATTTCACTTGGAAAATTCAGCCCTG
ACGTCGACGTAGAATTCAAAAAAGAACTAAACGCTGTCATTGAGAATTACAAAAAAACAGGCAAATTGCCTGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(31-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.229

98.742

0.516