Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG298_RS01075 Genome accession   NZ_CP085255
Coordinates   188768..189721 (+) Length   317 a.a.
NCBI ID   WP_404323011.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183768..194721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS01055 - 185033..185158 (+) 126 WP_258752018.1 hypothetical protein -
  LG298_RS01060 (LG298_01050) glmS 185254..187056 (+) 1803 WP_048008707.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  LG298_RS01065 (LG298_01055) - 187278..187652 (+) 375 WP_404324389.1 DUF4275 family protein -
  LG298_RS01070 (LG298_01060) - 187854..188243 (+) 390 WP_258752019.1 hypothetical protein -
  LG298_RS01075 (LG298_01065) ceuB 188768..189721 (+) 954 WP_404323011.1 ABC transporter permease Machinery gene
  LG298_RS01080 (LG298_01070) - 189711..190664 (+) 954 WP_248346549.1 iron chelate uptake ABC transporter family permease subunit -
  LG298_RS01085 (LG298_01075) - 190661..191428 (+) 768 WP_197212803.1 ABC transporter ATP-binding protein -
  LG298_RS01090 (LG298_01080) - 191627..192652 (+) 1026 WP_404323012.1 siderophore ABC transporter substrate-binding protein -
  LG298_RS01095 (LG298_01085) - 193033..193671 (+) 639 WP_404323013.1 O-methyltransferase -
  LG298_RS01100 (LG298_01090) - 193725..194564 (-) 840 WP_404323014.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34738.82 Da        Isoelectric Point: 9.3530

>NTDB_id=616557 LG298_RS01075 WP_404323011.1 188768..189721(+) (ceuB) [Cytobacillus firmus strain ABH-509]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTYVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616557 LG298_RS01075 WP_404323011.1 188768..189721(+) (ceuB) [Cytobacillus firmus strain ABH-509]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCTTTTATCTCGCTGTTTATCGGTGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATTT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGTATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCCATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTTTATGCGAATAAATTTACAGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACGGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACCGTGGCAGTGATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527