Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NR793_RS22395 Genome accession   NZ_CP102434
Coordinates   3011590..3012063 (+) Length   157 a.a.
NCBI ID   WP_005489555.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3006590..3017063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS22365 (NR793_22395) cytR 3006663..3007670 (+) 1008 WP_005481416.1 DNA-binding transcriptional regulator CytR Regulator
  NR793_RS22370 (NR793_22400) ftsN 3007847..3008392 (+) 546 WP_005489623.1 cell division protein FtsN -
  NR793_RS22375 (NR793_22405) hslV 3008556..3009107 (+) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  NR793_RS22380 (NR793_22410) hslU 3009131..3010462 (+) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  NR793_RS22385 (NR793_22415) - 3010886..3011110 (-) 225 WP_005489715.1 hypothetical protein -
  NR793_RS22390 (NR793_22420) - 3011270..3011419 (-) 150 WP_005489496.1 AlpA family phage regulatory protein -
  NR793_RS22395 (NR793_22425) radC 3011590..3012063 (+) 474 WP_005489555.1 DNA repair protein RadC Machinery gene
  NR793_RS22400 (NR793_22430) - 3012060..3012491 (+) 432 WP_005489473.1 DUF2787 family protein -
  NR793_RS22405 (NR793_22435) - 3012605..3013429 (+) 825 WP_025637280.1 WYL domain-containing protein -
  NR793_RS22410 (NR793_22440) - 3013426..3014589 (+) 1164 WP_025637281.1 hypothetical protein -
  NR793_RS22415 (NR793_22445) - 3014948..3015604 (-) 657 WP_024703424.1 inovirus Gp2 family protein -
  NR793_RS22420 (NR793_22450) - 3015986..3016789 (+) 804 WP_029559780.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17632.07 Da        Isoelectric Point: 7.2351

>NTDB_id=616499 NR793_RS22395 WP_005489555.1 3011590..3012063(+) (radC) [Vibrio parahaemolyticus strain RMDVP1]
MSSNHLHYQKQKKHQENEILEHAAEILANRYVRGNALCNPEATKEYVRFKLASSEHEVFALLLLDNQHRVIEFKSLFKGT
IDSASVYPREVVKSVLEVNAAAVILAHNHPSGDPSPSQADRRITRKLIDALALVDVRVLDHIVVGESSVSFAEKGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=616499 NR793_RS22395 WP_005489555.1 3011590..3012063(+) (radC) [Vibrio parahaemolyticus strain RMDVP1]
ATGTCGAGCAATCACCTTCACTACCAAAAACAAAAGAAACATCAAGAAAATGAAATCCTAGAGCATGCTGCTGAAATCCT
AGCTAACCGCTACGTTCGAGGTAATGCCCTTTGTAACCCTGAAGCAACCAAAGAGTATGTTCGATTCAAACTAGCCAGCT
CGGAGCACGAGGTTTTCGCTCTGCTATTACTTGATAACCAACACCGTGTCATCGAGTTTAAATCACTCTTTAAAGGCACC
ATTGACTCCGCCAGCGTCTATCCGCGCGAGGTCGTCAAAAGCGTTTTGGAAGTAAATGCTGCGGCGGTCATTCTGGCGCA
TAACCACCCTTCTGGTGACCCTTCCCCATCTCAAGCGGATAGGCGTATCACACGCAAGCTTATCGACGCTTTAGCGTTAG
TGGATGTCAGGGTGCTTGACCATATCGTTGTAGGAGAAAGTAGTGTCTCGTTTGCAGAAAAGGGGTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.175

87.261

0.42