Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   NR793_RS19395 Genome accession   NZ_CP102434
Coordinates   2374805..2378176 (-) Length   1123 a.a.
NCBI ID   WP_005478796.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2369805..2383176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS19375 (NR793_19405) - 2370646..2371074 (+) 429 WP_005455485.1 HIT domain-containing protein -
  NR793_RS19380 (NR793_19410) - 2371193..2371423 (-) 231 WP_005455490.1 FeoC-like transcriptional regulator -
  NR793_RS19385 (NR793_19415) feoB 2371420..2373696 (-) 2277 WP_005455466.1 Fe(2+) transporter permease subunit FeoB -
  NR793_RS19390 (NR793_19420) - 2373696..2373923 (-) 228 WP_005455496.1 FeoA family protein -
  NR793_RS19395 (NR793_19425) tfoS 2374805..2378176 (-) 3372 WP_005478796.1 AraC family transcriptional regulator Regulator
  NR793_RS19400 (NR793_19430) znuA 2378387..2379265 (-) 879 WP_005455470.1 zinc ABC transporter substrate-binding protein ZnuA -
  NR793_RS19405 (NR793_19435) znuC 2379344..2380132 (+) 789 WP_005455461.1 zinc ABC transporter ATP-binding protein ZnuC -
  NR793_RS19410 (NR793_19440) znuB 2380125..2380910 (+) 786 WP_005455500.1 zinc ABC transporter permease subunit ZnuB -
  NR793_RS19415 (NR793_19445) sucD 2381048..2381920 (-) 873 WP_005455492.1 succinate--CoA ligase subunit alpha -
  NR793_RS19420 (NR793_19450) sucC 2381920..2383086 (-) 1167 WP_005455468.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126869.43 Da        Isoelectric Point: 5.6541

>NTDB_id=616489 NR793_RS19395 WP_005478796.1 2374805..2378176(-) (tfoS) [Vibrio parahaemolyticus strain RMDVP1]
MLRQLVLIFWGLFISSQAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERRLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKVSFPYLQVMAGHAVEHIALDDTNRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLSGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVMAGVVGLESR
FEVLKPWYLSQLAILGFFVSVSTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPVERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIVEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDS
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=616489 NR793_RS19395 WP_005478796.1 2374805..2378176(-) (tfoS) [Vibrio parahaemolyticus strain RMDVP1]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCAAGCATTTGCGCTGAACAACGCGAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTAT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACTGCAAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCGGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTCA
GTGATGGCGCACATTTTTATACCTACAATATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTTTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGGTCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACCAATCAAGAGTATTGGGTTGGTACTGAGCACGGTTTGTATCTCTACTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAGCTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGACAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAACTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAAA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGCTTGGAGATATTCCAACTGGAGGGGCTG
AAAAAGGTTAGCTTCCCTTATTTACAAGTAATGGCTGGGCATGCTGTTGAGCACATTGCTCTAGACGACACAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTATTTACCAGCTAAAGTGACGCGCTTATATGATACCGAAGATAAACTTTTTATTGGTACGGACCACGGCATT
TACGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGAGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTTGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGTCCGGTGAGTTAGTTAAACACTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGCGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTTTACTACCGCTTAAACGAAGACGACCGATGGCAGACCTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAATGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGCTTGCGATATTAGGCTTTTTCGTCTCAGTTTCTACGCTTATCGGCCT
TATCATGTACTGGCGATCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAAC
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAGTGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTGAATGAGCTTAAAAGTGCTCCGGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTGGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTTAATCTGGACGTTATCTTCAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGTTAGAAGAGGGGCGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTCTCTCTAAGTCGTCCTGCTAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAGTTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCAAAAGAGTTGAGCCATGTTGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGTCGAAGAGAAAGCCAGTCCAG
AAAATGAGTGGCTACAAAAGGTCTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGCACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATCTAAC
AGAAGTACGCTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAATTGCGGTTTCA
ATGATCCCTCTTACTTCAGCCAGAAGTTCAAGTTGCACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAGACAGT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.622

100

0.394