Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG330_RS10815 Genome accession   NZ_CP085252
Coordinates   2008601..2010295 (-) Length   564 a.a.
NCBI ID   WP_404403706.1    Uniprot ID   -
Organism   Jeotgalibacillus malaysiensis strain ABH-525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2003601..2015295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG330_RS10795 (LG330_10740) - 2005273..2005515 (+) 243 WP_404403700.1 DUF2627 domain-containing protein -
  LG330_RS10800 (LG330_10745) - 2005532..2006248 (-) 717 WP_404403702.1 glycerophosphodiester phosphodiesterase -
  LG330_RS10805 (LG330_10750) spo0A 2006498..2007265 (-) 768 WP_404409570.1 sporulation transcription factor Spo0A -
  LG330_RS10810 (LG330_10755) spoIVB 2007511..2008506 (-) 996 WP_404403704.1 SpoIVB peptidase -
  LG330_RS10815 (LG330_10760) recN 2008601..2010295 (-) 1695 WP_404403706.1 DNA repair protein RecN Machinery gene
  LG330_RS10820 (LG330_10765) ahrC 2010312..2010761 (-) 450 WP_404409572.1 transcriptional regulator AhrC/ArgR -
  LG330_RS10825 (LG330_10770) - 2010898..2011740 (-) 843 WP_404403708.1 TlyA family RNA methyltransferase -
  LG330_RS10830 (LG330_10775) dxs 2011743..2013635 (-) 1893 WP_404403710.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG330_RS10835 (LG330_10780) - 2013708..2014295 (-) 588 WP_404403712.1 hypothetical protein -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 63555.85 Da        Isoelectric Point: 4.6209

>NTDB_id=616467 LG330_RS10815 WP_404403706.1 2008601..2010295(-) (recN) [Jeotgalibacillus malaysiensis strain ABH-525]
MLQDLSIRNFAIIDELSLSLEDGLTVLTGETGAGKSIIIDAVQLLVGARGSAEFVRHGEKKAEIEGVFSAPEGHPVFNKC
QEFGIEIEDEMVLLKRDISSSGKSSCRINGKLVTISILREVGGALIDIHGQHESQELMDESAHIHLLDQFGAEEISEAKK
NYQEVYTVYADLKKQIRSLSENDQQMAHRLDLIQFQYKEIQDADLSLNEDEELMEERIRLSNFEKLYESLQTAYEALQGE
QRGLDWTGLAMSNMEHAAEIDQDLKQISDTISSQFYLLEDSAREIRQHLDSLEFDPERLQMIEDRLNEINQLKRKYGSSI
EEIMEYFSGIEEEIEAITNKDSSLEDLKNKLESIKKDLSVEAEHLSALRKKWAEILTEAIHGELKALYMDKAVFKVHFAE
QKPENYKSNGIDEIEFYISTNPGEPLKPLIKVASGGEISRMMLALKTIFSEHQGITSIIFDEVDTGVSGRVAQAIAEKIY
SISAHSQVLCISHLPQVAAISDRHLFISKEVKNDRTHTSVSPLAKEDRVKEISRMISGVEITDLTISHAEELIHLAHTIK
KSAV

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=616467 LG330_RS10815 WP_404403706.1 2008601..2010295(-) (recN) [Jeotgalibacillus malaysiensis strain ABH-525]
TTGTTACAGGACTTATCAATACGTAATTTTGCGATTATAGACGAACTTTCTTTATCATTAGAAGACGGCCTTACTGTTTT
GACCGGGGAGACCGGTGCGGGTAAATCGATTATTATTGATGCTGTACAGCTGCTTGTAGGTGCAAGGGGATCAGCTGAAT
TTGTCAGACACGGTGAAAAAAAAGCTGAAATTGAAGGTGTGTTTTCTGCACCTGAAGGACACCCTGTCTTCAATAAGTGT
CAGGAATTCGGAATCGAAATAGAGGATGAGATGGTTCTCCTGAAAAGAGATATTTCCTCTTCGGGTAAAAGCTCATGCCG
GATTAACGGGAAGCTTGTTACAATTTCTATTTTAAGGGAAGTCGGCGGAGCCCTGATTGATATTCATGGGCAGCATGAAA
GTCAGGAACTGATGGATGAATCAGCACATATTCATTTACTTGATCAGTTTGGCGCCGAAGAAATCAGCGAAGCCAAAAAG
AATTATCAGGAAGTGTATACTGTGTATGCTGATCTGAAAAAGCAAATCAGATCATTATCAGAAAATGACCAGCAGATGGC
TCACAGGCTGGATTTGATACAGTTTCAATATAAGGAAATTCAGGATGCTGACTTATCACTTAATGAAGATGAAGAACTGA
TGGAAGAAAGAATCAGGCTTTCCAACTTTGAAAAACTTTATGAATCACTTCAGACAGCTTATGAAGCGCTTCAGGGTGAA
CAGCGCGGCCTTGATTGGACTGGTCTTGCCATGTCCAATATGGAGCATGCTGCAGAAATTGATCAGGATTTAAAGCAGAT
CAGTGATACAATCAGCAGTCAGTTTTATTTACTTGAGGATTCAGCAAGAGAGATCAGACAGCACCTCGACAGTCTGGAAT
TTGATCCGGAAAGACTCCAGATGATAGAAGACAGGCTGAATGAAATCAACCAGTTGAAACGTAAGTATGGCTCTTCTATT
GAAGAGATTATGGAATACTTTTCAGGGATCGAGGAAGAAATCGAAGCAATCACCAATAAGGATTCGTCTCTTGAGGATTT
GAAAAATAAACTTGAATCCATTAAAAAGGATTTATCTGTTGAGGCAGAACATTTATCTGCCCTCAGAAAAAAATGGGCAG
AAATTTTAACTGAGGCAATACACGGTGAATTAAAAGCACTGTATATGGATAAAGCTGTATTTAAAGTGCATTTTGCTGAA
CAAAAGCCTGAGAATTATAAATCGAACGGTATTGATGAGATCGAATTTTACATCTCAACCAACCCCGGTGAACCGCTTAA
ACCGCTAATTAAAGTAGCTTCCGGTGGAGAAATCTCGAGAATGATGCTGGCACTTAAAACAATTTTTTCGGAGCATCAGG
GAATTACTTCTATCATCTTTGACGAAGTCGACACCGGCGTTAGTGGAAGGGTTGCTCAGGCAATTGCTGAAAAGATCTAT
TCCATCTCCGCTCACTCTCAGGTACTTTGTATTTCCCATCTGCCACAGGTAGCTGCGATCAGTGACCGTCATTTATTTAT
TTCTAAAGAAGTTAAAAATGACCGGACTCATACGAGTGTCAGCCCGCTTGCCAAAGAAGACAGAGTAAAAGAAATCAGCA
GAATGATTTCCGGGGTTGAGATTACTGACTTAACAATCAGCCATGCAGAAGAACTTATACACTTAGCACATACAATTAAA
AAATCTGCTGTGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.854

100

0.601