Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NR793_RS13045 Genome accession   NZ_CP102434
Coordinates   1004824..1005423 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 999824..1010423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS13020 (NR793_13045) - 1000976..1001107 (+) 132 WP_005380608.1 hypothetical protein -
  NR793_RS13025 (NR793_13050) - 1001180..1001527 (+) 348 WP_228763495.1 YbaN family protein -
  NR793_RS13030 (NR793_13055) apt 1001693..1002238 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  NR793_RS13035 (NR793_13060) dnaX 1002247..1004382 (+) 2136 WP_005460096.1 DNA polymerase III subunit gamma/tau -
  NR793_RS13040 (NR793_13065) - 1004465..1004794 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  NR793_RS13045 (NR793_13070) recR 1004824..1005423 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  NR793_RS13050 (NR793_13075) aqpZ 1005474..1006172 (-) 699 WP_005460095.1 aquaporin Z -
  NR793_RS13055 (NR793_13080) - 1006379..1007638 (-) 1260 WP_021451163.1 aromatic amino acid transport family protein -
  NR793_RS13060 (NR793_13085) - 1007956..1008336 (+) 381 WP_005479566.1 RidA family protein -
  NR793_RS13065 (NR793_13090) - 1008352..1009629 (+) 1278 WP_005479508.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  NR793_RS13070 (NR793_13095) - 1009658..1010317 (+) 660 WP_005397228.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=616457 NR793_RS13045 WP_005460088.1 1004824..1005423(+) (recR) [Vibrio parahaemolyticus strain RMDVP1]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=616457 NR793_RS13045 WP_005460088.1 1004824..1005423(+) (recR) [Vibrio parahaemolyticus strain RMDVP1]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTTGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTTGTAGATGGCAC
GACCTTGTCACACTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432