Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   LG330_RS02745 Genome accession   NZ_CP085252
Coordinates   462732..463685 (+) Length   317 a.a.
NCBI ID   WP_404407194.1    Uniprot ID   -
Organism   Jeotgalibacillus malaysiensis strain ABH-525     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 457732..468685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG330_RS02715 (LG330_02705) - 458166..458357 (-) 192 WP_404407188.1 hypothetical protein -
  LG330_RS02720 (LG330_02710) - 458630..459652 (+) 1023 WP_404407189.1 hypothetical protein -
  LG330_RS02725 (LG330_02715) - 459645..460337 (+) 693 WP_404407190.1 DUF2306 domain-containing protein -
  LG330_RS02730 (LG330_02720) - 460379..461401 (+) 1023 WP_404407191.1 phosphotransferase enzyme family protein -
  LG330_RS02735 (LG330_02725) - 461480..461992 (+) 513 WP_404407192.1 divergent PAP2 family protein -
  LG330_RS02740 (LG330_02730) - 462139..462579 (+) 441 WP_404407193.1 MarR family winged helix-turn-helix transcriptional regulator -
  LG330_RS02745 (LG330_02735) ceuB 462732..463685 (+) 954 WP_404407194.1 ABC transporter permease Machinery gene
  LG330_RS02750 (LG330_02740) - 463699..464619 (+) 921 WP_404409476.1 iron chelate uptake ABC transporter family permease subunit -
  LG330_RS02755 (LG330_02745) - 464620..465378 (+) 759 WP_404407195.1 ABC transporter ATP-binding protein -
  LG330_RS02760 (LG330_02750) - 465394..466332 (+) 939 WP_404407196.1 siderophore ABC transporter substrate-binding protein -
  LG330_RS02765 (LG330_02755) - 466446..467279 (+) 834 WP_404407197.1 SDR family oxidoreductase -
  LG330_RS02770 (LG330_02760) - 467607..468458 (+) 852 WP_404407198.1 MurR/RpiR family transcriptional regulator -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34916.94 Da        Isoelectric Point: 9.9967

>NTDB_id=616447 LG330_RS02745 WP_404407194.1 462732..463685(+) (ceuB) [Jeotgalibacillus malaysiensis strain ABH-525]
MKKRYLASALVLFAVGSLFVGVSSISPMDLFDLSEEQLHVLWNSRLPRLMSILLAGAGMSVCGLIMQQLSRNKFVSPTTA
GTMDSARLGVLVSLMLFTSASPLLKMSIAFLFALLGTFIFMKILDRIKFKDVIFVPLVGLMFGNIISSITTFFAYERDLI
QNMSAWMQGDFSLIVTGRYELMFLSIPFMIAAYIFANKFTIAGMGEDFAVSLGLKYRTVVNTGLVLVAFVTSSVLLTVGM
IPFLGLVVPNIVSLYQGDNLKKNLPHTAMLGALFVLVCDILGRIVIYPYELPINLTVGVLGSGIFAWLLIRRRSREA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=616447 LG330_RS02745 WP_404407194.1 462732..463685(+) (ceuB) [Jeotgalibacillus malaysiensis strain ABH-525]
ATGAAAAAACGATATCTGGCCAGTGCACTCGTTCTTTTCGCTGTAGGATCTCTGTTTGTCGGGGTTTCATCTATTTCCCC
AATGGATTTATTTGATTTGTCAGAGGAACAGCTGCACGTTTTATGGAACAGCCGTCTGCCGCGTTTAATGAGTATATTGC
TTGCGGGAGCGGGGATGAGTGTGTGCGGGCTGATTATGCAGCAGCTCTCACGTAATAAATTTGTATCACCAACGACTGCG
GGGACAATGGACTCTGCAAGACTCGGTGTGCTGGTATCACTCATGTTATTTACCAGTGCATCACCATTGTTAAAAATGAG
TATCGCATTCCTTTTTGCTTTACTCGGCACGTTTATATTTATGAAAATTTTAGACCGTATTAAGTTCAAGGATGTCATTT
TCGTACCGCTCGTCGGTTTGATGTTCGGGAATATTATCAGCTCGATTACAACCTTTTTCGCTTATGAGCGGGATCTCATT
CAGAATATGTCTGCCTGGATGCAGGGCGACTTTTCGCTAATCGTGACCGGCCGCTATGAACTGATGTTTTTAAGTATTCC
TTTCATGATTGCCGCATACATATTTGCAAATAAGTTCACGATTGCAGGAATGGGTGAGGACTTTGCAGTCAGCCTCGGGT
TGAAATACAGAACGGTTGTCAATACAGGCCTTGTGCTTGTTGCCTTTGTTACTTCATCTGTCTTGCTGACAGTCGGGATG
ATTCCTTTTCTTGGACTGGTTGTACCGAATATTGTCAGTCTCTATCAGGGGGATAACCTGAAAAAGAATCTGCCTCATAC
AGCAATGCTCGGGGCACTATTCGTTCTTGTCTGTGACATTCTCGGACGAATTGTCATTTACCCGTATGAACTGCCGATTA
ACCTGACCGTTGGTGTACTTGGTAGCGGAATCTTTGCGTGGCTGCTGATAAGGAGGCGATCACGTGAAGCATAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.662

98.107

0.536