Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NR793_RS10925 Genome accession   NZ_CP102434
Coordinates   542732..544726 (+) Length   664 a.a.
NCBI ID   WP_005482487.1    Uniprot ID   Q87LK8
Organism   Vibrio parahaemolyticus strain RMDVP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 537732..549726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NR793_RS10900 (NR793_10925) rsmE 537884..538615 (-) 732 WP_005461719.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NR793_RS10905 (NR793_10930) endA 538740..539435 (-) 696 WP_005461720.1 deoxyribonuclease I -
  NR793_RS10910 (NR793_10935) - 539555..540052 (-) 498 WP_005461721.1 SprT family zinc-dependent metalloprotease -
  NR793_RS10915 (NR793_10940) - 540119..540916 (-) 798 WP_005461722.1 DUF2189 domain-containing protein -
  NR793_RS10920 (NR793_10945) metK 541261..542415 (-) 1155 WP_005461723.1 methionine adenosyltransferase -
  NR793_RS10925 (NR793_10950) recP/tkt 542732..544726 (+) 1995 WP_005482487.1 transketolase Machinery gene
  NR793_RS10930 (NR793_10955) - 544804..545697 (-) 894 WP_005461724.1 LysR family transcriptional regulator -
  NR793_RS10935 (NR793_10960) - 545834..547792 (+) 1959 WP_005461725.1 ligand-gated channel protein -
  NR793_RS10940 (NR793_10965) epd 547923..548960 (+) 1038 WP_005461726.1 erythrose-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 72031.12 Da        Isoelectric Point: 4.7634

>NTDB_id=616444 NR793_RS10925 WP_005482487.1 542732..544726(+) (recP/tkt) [Vibrio parahaemolyticus strain RMDVP1]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPAVDGHDSDAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKANQIIADLQANPANIASRKASQNALEAFGQMLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQMA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQERTAEQVTDIAKGGYILKDSDGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=616444 NR793_RS10925 WP_005482487.1 542732..544726(+) (recP/tkt) [Vibrio parahaemolyticus strain RMDVP1]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGCTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGACCATTTCACTTACGTGTTCATGGGTGATGGCTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACTCTAGGCCTAGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCATGTAATCC
CAGCAGTGGATGGCCACGATTCTGACGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGACCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCTCCAAACAAATCGGGTTCTCACGACTGTCACGGTGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCACGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCGGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAACGGCGAACTTCCTGCAGAGTGGGAAGAGAAAGCAAACCAAATCATTGCTGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAATGCTCTAGAAGCTTTCGGTCAAATGCTACCAGAAT
TCATGGGCGGCTCTGCTGACCTAGCGCCTTCTAACCTAACCATGTGGTCTGGTTCTAAGTCTCTAGAAGCGAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATTATGAACGGTATCGCACTACACGGCGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGTAACGCAATGCGTATGGCTGCTTTGATGAAAATTC
AGAACATCCAAGTGTACACACACGATTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCAGTTGAGCAAATGGCG
TCTCTACGTTTGACTCCAAATATGAACACATGGCGCCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAAGAGCGTACTGCAGAGCAAGTTA
CAGACATCGCGAAAGGTGGTTACATCCTGAAAGACAGCGATGGCAAACCTGAGCTAATCCTAATCGCAACAGGTTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAGCAACTAACCGCAGAAGGTAAGAAAGTACGCGTTGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCTCGTATCGCTATTGAAGCGG
GCATCGCAGACTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(541-655)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.706

98.946

0.482