Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG321_RS13890 Genome accession   NZ_CP085250
Coordinates   2699446..2701152 (-) Length   568 a.a.
NCBI ID   WP_404458409.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2694446..2706152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG321_RS13865 (LG321_13825) - 2695020..2695262 (+) 243 WP_223489928.1 DUF2627 domain-containing protein -
  LG321_RS13870 (LG321_13830) - 2695291..2696016 (-) 726 WP_404458404.1 glycerophosphodiester phosphodiesterase -
  LG321_RS13875 (LG321_13835) - 2696109..2696261 (+) 153 WP_404458406.1 YycC family protein -
  LG321_RS13880 (LG321_13840) spo0A 2696350..2697141 (-) 792 WP_088018747.1 sporulation transcription factor Spo0A -
  LG321_RS13885 (LG321_13845) spoIVB 2697415..2698710 (-) 1296 WP_223489932.1 SpoIVB peptidase -
  LG321_RS13890 (LG321_13850) recN 2699446..2701152 (-) 1707 WP_404458409.1 DNA repair protein RecN Machinery gene
  LG321_RS13895 (LG321_13855) ahrC 2701175..2701624 (-) 450 WP_010194884.1 transcriptional regulator AhrC/ArgR -
  LG321_RS13900 (LG321_13860) - 2701717..2702553 (-) 837 WP_404458412.1 TlyA family RNA methyltransferase -
  LG321_RS13905 (LG321_13865) dxs 2702560..2704452 (-) 1893 WP_404458415.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG321_RS13910 (LG321_13870) - 2704475..2705074 (-) 600 WP_223489942.1 hypothetical protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64242.00 Da        Isoelectric Point: 4.9332

>NTDB_id=616411 LG321_RS13890 WP_404458409.1 2699446..2701152(-) (recN) [Sutcliffiella horikoshii strain ABH-541]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDEKHPAYRI
CQELGIEIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLSLLDQFGGAAVQKEL
KEYRNIYSSFKDVEKRLLELTENEQKVAHRLDLLQFQAEEISNAQLTVNEEDELLEERNKISNYERLYQSLNNCYHAMHG
EQKGLDWVGQAMSESEGLEEIDKNLKDVHEIISNSYYQLEELSYRIRDEIDQIEFDPNRLDFIEGRLNEIKQLKRKYGTT
VAEVLEYASKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFNVNMD
VKMEKVSGDAVFGKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLDQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQG

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=616411 LG321_RS13890 WP_404458409.1 2699446..2701152(-) (recN) [Sutcliffiella horikoshii strain ABH-541]
ATGATTGCTGAATTAACCATTAAAAATTTTGCTATTATTGAATCCCTTTCTGTATCTTTTGACAAAGGGTTAACTGTTTT
AACCGGGGAGACCGGAGCGGGTAAATCCATTATCATTGATGCCATCCACTTGCTGGCGGGTGGACGTGGATCACATGAGT
TTGTCCGTTTCGGTGAAAAACGAGCGGAACTCGAAGGCTTGTTCCTTCTTGAAGATGAGAAGCATCCTGCCTATAGAATT
TGTCAGGAGCTTGGTATTGAGATAGAAGACGAGATGGTTGTCTTGAGACGGGAAATTCATGCTACAGGGAAAAGTGTTTG
CCGTGTTAATGGAAAGCTTGTCACCATAGCCCTGTTAAGGGAAGTCGGTCAGACATTGGTGGACATTCATGGGCAGCACG
AACACCAGGAACTGATGGACCCGGATTTGCATCTTTCGCTTTTAGATCAGTTTGGAGGAGCGGCTGTTCAAAAGGAACTT
AAAGAGTATAGGAACATTTATTCATCTTTTAAGGATGTAGAAAAAAGGCTGCTAGAACTCACGGAAAATGAACAAAAGGT
TGCACATCGCCTTGATTTGTTGCAGTTCCAAGCAGAAGAAATCAGCAATGCGCAATTAACCGTCAATGAAGAAGACGAGC
TGCTCGAGGAACGGAATAAAATCAGTAACTATGAACGACTTTACCAATCGCTCAACAACTGTTACCATGCGATGCACGGC
GAACAAAAGGGACTTGATTGGGTCGGACAAGCCATGTCTGAATCCGAGGGTCTCGAAGAAATCGATAAAAACCTTAAAGA
TGTTCACGAAATCATTTCCAATTCTTATTATCAATTAGAAGAACTATCTTATCGTATTAGAGATGAAATAGATCAGATTG
AGTTTGATCCAAACCGCCTTGATTTTATTGAAGGCAGATTAAATGAAATCAAGCAATTGAAACGGAAATACGGTACTACG
GTCGCTGAAGTTTTAGAATATGCTTCGAAAATAGAAGAAGAGCTTGAGACTTTGCAAAACCGTGATTCGCACATTCATCA
GTTGCAGGAGTCTCTTGAGTCGCTTAAACAAGATCTTGCACTTGAAGCGAAATCGCTTACTGATGCCCGTAGAAAAGCGT
CAGAGAAACTAATGAAGAGCATTCATAAAGAGCTCAAAGACCTGTACTTGGAAAAAGCCATTTTTAATGTGAACATGGAC
GTAAAAATGGAAAAGGTATCAGGCGATGCGGTGTTTGGTAAAAACGGAGTGGATGTTGTGGAATTCTACCTTACAACAAA
CCCGGGGGAACCTTTGAAGCCAATGGCAAAAGTAGCCTCAGGCGGTGAACTTTCGAGGATCATGCTTGCATTGAAGAGTA
TCTTCTCCAGACACCAAGGGATTACATCCATCATTTTTGATGAAGTCGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATTTATCAGGTATCGGTTGATTCGCAGGTCCTTTGTATCTCCCACTTGCCTCAAGTTGCAGCGATGTC
AGACACTCATCTATTCATCAGCAAGGAAGTCTCCGGTGAACGCACGAAAACCAAAGTGCGTGGACTGGATCAGGACGAAA
AGGTGCGTGAAATCGGCCGGATGATTTCTGGCGTGGAGATTACTTCATTGACGAAGGAGCATGCACGCGAGTTGTTGGAG
ATTGCCGGGAGTATTAAGCAGGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.233

100

0.599