Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SANR_RS01040 Genome accession   NC_022239
Coordinates   182256..183674 (+) Length   472 a.a.
NCBI ID   WP_148290565.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 177256..188674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS01020 (SANR_0197) dinB 177863..178930 (+) 1068 WP_003034065.1 DNA polymerase IV -
  SANR_RS01025 - 179195..180396 (-) 1202 Protein_168 IS110 family transposase -
  SANR_RS01030 (SANR_0200) - 180728..181759 (+) 1032 WP_003033485.1 S66 peptidase family protein -
  SANR_RS01035 (SANR_0201) - 181853..182296 (+) 444 WP_003033465.1 dUTP diphosphatase -
  SANR_RS01040 (SANR_0202) radA 182256..183674 (+) 1419 WP_148290565.1 DNA repair protein RadA Machinery gene
  SANR_RS01045 (SANR_0203) - 184003..185931 (+) 1929 WP_003033444.1 BglG family transcription antiterminator -
  SANR_RS01050 (SANR_0204) - 185957..186409 (+) 453 WP_025272016.1 PTS sugar transporter subunit IIA -
  SANR_RS01055 (SANR_0205) - 186432..186710 (+) 279 WP_003033436.1 PTS sugar transporter subunit IIB -
  SANR_RS01060 (SANR_0206) - 186735..188078 (+) 1344 WP_003033480.1 PTS galactitol transporter subunit IIC -
  SANR_RS01065 - 188079..188261 (+) 183 WP_003033455.1 hypothetical protein -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51501.26 Da        Isoelectric Point: 5.8400

>NTDB_id=61638 SANR_RS01040 WP_148290565.1 182256..183674(+) (radA) [Streptococcus anginosus C238]
MVCGQVVLEARGIKKEESIIAKKKATFVCQNCEYHSSKYLGRCPNCGAWSSFVEEVEVTEIKNARVSLTGEKSRPMKLAE
VTSLNVNRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQSIRAEIEKIKPDFLIIDSIQTILSPEISSVQGSVSQVREVTAELMQLAKTNNIAIFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGTAKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDL
PTNPQECFIGEIGLTGEIRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLNIPENIEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=61638 SANR_RS01040 WP_148290565.1 182256..183674(+) (radA) [Streptococcus anginosus C238]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACGGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAAGCGACATT
TGTTTGTCAAAATTGTGAATATCATTCCTCCAAGTATCTAGGGCGCTGCCCTAACTGTGGGGCTTGGTCTTCTTTTGTCG
AAGAGGTTGAAGTTACAGAGATTAAGAATGCGCGTGTTTCTCTGACAGGGGAAAAAAGTCGACCGATGAAGTTAGCGGAG
GTGACTTCTCTCAATGTCAACCGTACCAAGACAGATATGGATGAATTTAACCGCGTCTTGGGCGGTGGCGTGGTGCCAGG
AAGTTTAGTTCTAATCGGAGGAGACCCAGGCATTGGGAAATCTACCCTTTTATTGCAGGTTTCTACCCAGCTCTCTCACA
AGGGAACGGTATTGTATGTCAGTGGGGAAGAGTCTGCCGAGCAGATTAAGCTACGGGCCGAGCGGCTGGGCGATATTGAC
AGCGAGTTTTACCTCTATGCTGAGACCAATATGCAGAGTATTCGTGCTGAGATTGAAAAAATTAAACCAGATTTTTTGAT
TATAGACTCCATTCAGACGATTCTATCGCCAGAAATTTCTAGTGTGCAAGGCTCGGTTTCGCAAGTCCGAGAAGTGACCG
CGGAGCTGATGCAGTTGGCGAAAACCAACAATATTGCCATCTTTATTGTCGGTCATATGACGAAAGAGGGCACTCTGGCT
GGACCTAGAACCTTGGAACACATGGTGGATACGGTACTTTATTTTGAAGGTGAGCGACAGCATACTTTTCGTATTTTGCG
GGCGGTCAAAAACCGCTTCGGCTCTACGAATGAAATCGGCATTTTTGAGATGCAGTCAGGTGGTCTGGTTGAAGTGCTCA
ATCCTAGCCAGGTTTTCTTAGAGGAGCGTTTAGATGGAGCAACAGGCTCTTCTATCGTGGTGACCATGGAGGGGACGCGT
CCAATCCTTGCGGAAGTGCAGGCTTTGGTGACGCCTACTATGTTTGGCACTGCCAAGCGGACAACGACAGGATTGGATTT
CAATCGCGCCAGTCTAATTATGGCTGTTTTGGAAAAGCGAGCAGGGCTATTATTGCAAAATCAAGATGCCTACCTCAAGT
CAGCAGGCGGTGTCAAATTGGATGAGCCAGCTATTGACTTAGCTGTCGCCGTTGCAATTGCTTCGAGTTATAAAGATTTG
CCAACGAATCCACAAGAATGTTTTATTGGTGAAATCGGTCTGACGGGCGAAATCCGCCGTGTTAATCGCATTGAGCAACG
TATCAATGAAGCTGCTAAGCTGGGCTTCACAAAAGTTTACGCTCCTAAAAACTCTCTGAATGGATTGAATATTCCCGAAA
ATATTGAAGTTATAGGTGTGACAACAATTGGAGAAGTGCTGAAGAAGGTGTTTGGGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(380-444)

AAA domain (AAA_25)

(82-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

91.593

95.763

0.877
  radA Streptococcus pneumoniae D39

91.593

95.763

0.877
  radA Streptococcus pneumoniae R6

91.593

95.763

0.877
  radA Streptococcus pneumoniae TIGR4

91.593

95.763

0.877
  radA Streptococcus mitis SK321

91.593

95.763

0.877
  radA Streptococcus mitis NCTC 12261

91.372

95.763

0.875
  radA Bacillus subtilis subsp. subtilis str. 168

62.144

96.822

0.602

Multiple sequence alignment