Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG279_RS13525 Genome accession   NZ_CP085249
Coordinates   2620717..2622423 (-) Length   568 a.a.
NCBI ID   WP_404428574.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-543     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2615717..2627423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG279_RS13500 (LG279_13460) - 2615931..2616173 (+) 243 WP_223489928.1 DUF2627 domain-containing protein -
  LG279_RS13505 (LG279_13465) - 2616637..2617362 (-) 726 WP_404428571.1 glycerophosphodiester phosphodiesterase -
  LG279_RS13510 (LG279_13470) - 2617455..2617610 (+) 156 WP_010194889.1 YycC family protein -
  LG279_RS13515 (LG279_13475) spo0A 2617706..2618497 (-) 792 WP_404428572.1 sporulation transcription factor Spo0A -
  LG279_RS13520 (LG279_13480) spoIVB 2618771..2620066 (-) 1296 WP_404428573.1 SpoIVB peptidase -
  LG279_RS13525 (LG279_13485) recN 2620717..2622423 (-) 1707 WP_404428574.1 DNA repair protein RecN Machinery gene
  LG279_RS13530 (LG279_13490) ahrC 2622446..2622895 (-) 450 WP_010194884.1 transcriptional regulator AhrC/ArgR -
  LG279_RS13535 (LG279_13495) - 2622988..2623824 (-) 837 WP_404428575.1 TlyA family RNA methyltransferase -
  LG279_RS13540 (LG279_13500) dxs 2623831..2625723 (-) 1893 WP_404428576.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG279_RS13545 (LG279_13505) - 2625746..2626345 (-) 600 WP_404428577.1 hypothetical protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64159.80 Da        Isoelectric Point: 4.8590

>NTDB_id=616355 LG279_RS13525 WP_404428574.1 2620717..2622423(-) (recN) [Sutcliffiella horikoshii strain ABH-543]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDENHPAYRV
CQELGIDIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDADLHLLLLDQFGGATVQKEL
KEYRNIYTSFKDVEKRLLELTENEQKVAHRLDLLQFQAEEISNAQLTVNEEDELLEERNKISNYERLYQSLNNCYYALHG
EQKGLDWVGQAMSESEGLEEIDKNLKDVHEIISNSYYQLEELSYRIRDEIDQLEFDPNRLDFIEGRLNEIKQLKRKYGSS
VAEILEYGAKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFDVNID
VKKEKASGDAVFGKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLDQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQG

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=616355 LG279_RS13525 WP_404428574.1 2620717..2622423(-) (recN) [Sutcliffiella horikoshii strain ABH-543]
ATGATTGCTGAATTAACCATTAAAAATTTTGCTATTATTGAATCCCTTTCTGTTTCTTTTGACAAAGGGTTAACGGTTTT
AACCGGGGAGACTGGAGCGGGTAAATCCATTATTATTGATGCCATCCACTTGCTGGCGGGTGGACGGGGATCACATGAGT
TTGTCCGTTTTGGTGAAAAACGAGCAGAATTGGAAGGCTTGTTCCTTCTTGAGGACGAGAACCATCCTGCTTATAGAGTT
TGTCAGGAGCTTGGTATTGATATAGAAGACGAAATGGTTGTTTTGAGACGTGAAATCCATGCTACAGGTAAGAGTGTTTG
CCGTGTTAATGGGAAGCTTGTCACCATTGCTTTGTTAAGGGAAGTCGGTCAGACATTGGTGGACATTCATGGACAGCACG
AACACCAGGAGCTGATGGACGCGGATTTGCATCTTTTGCTTTTAGATCAGTTTGGCGGAGCAACCGTTCAAAAGGAACTT
AAAGAGTATAGAAACATTTATACTTCATTTAAGGACGTAGAAAAAAGGTTGCTAGAACTCACGGAAAATGAACAAAAGGT
CGCACATCGCCTTGATTTATTGCAGTTCCAAGCAGAAGAAATCAGCAATGCGCAATTAACCGTGAATGAAGAGGATGAGC
TGCTCGAGGAGCGAAACAAAATCAGTAACTATGAACGGCTTTATCAATCGCTCAACAACTGTTACTATGCGTTGCACGGA
GAACAAAAGGGACTTGATTGGGTTGGACAAGCCATGTCTGAATCCGAAGGCCTAGAAGAAATCGATAAAAACCTTAAAGA
TGTTCACGAAATCATTTCCAATTCTTATTATCAATTAGAAGAACTATCTTACCGTATTAGAGATGAAATAGATCAGCTTG
AGTTTGATCCAAACCGCCTTGATTTTATCGAAGGCAGATTAAATGAAATCAAGCAACTGAAACGGAAATACGGCAGCTCG
GTTGCGGAAATATTAGAGTATGGCGCAAAGATAGAAGAAGAGCTCGAGACTTTGCAAAACCGTGATTCGCACATACACCA
GTTGCAGGAGTCTCTTGAGTCACTTAAACAAGATCTTGCACTTGAAGCGAAATCGCTTACTGATGCACGTAGAAAAGCGT
CCGAGAAACTAATGAAGAGCATCCACAAAGAGCTCAAAGACCTGTACTTGGAAAAAGCAATCTTTGATGTGAACATAGAC
GTGAAAAAGGAAAAGGCGTCAGGTGATGCGGTGTTTGGTAAGAACGGTGTGGATGTTGTAGAGTTCTACCTTACAACAAA
CCCGGGGGAACCATTGAAGCCAATGGCAAAAGTCGCCTCTGGCGGGGAACTTTCGAGGATTATGCTTGCTTTGAAGAGTA
TCTTCTCAAGGCACCAAGGCATCACATCCATCATTTTTGATGAGGTCGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATTTATCAGGTCTCGGTTGATTCGCAGGTGCTTTGTATCTCTCACTTACCTCAAGTTGCTGCGATGTC
AGACACTCATCTATTCATCAGCAAGGAAGTATCCGGTGAGCGTACGAAAACTAAAGTACGCGGACTTGATCAGGACGAAA
AGGTGCGTGAAATCGGCCGGATGATTTCTGGTGTCGAGATTACTTCTTTGACGAAGGAGCATGCGCGAGAGTTGTTGGAG
ATTGCCGGAAGTATTAAGCAGGGGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.756

100

0.604