Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SCI_RS08930 Genome accession   NC_022238
Coordinates   1811416..1812834 (-) Length   472 a.a.
NCBI ID   WP_148290517.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1806416..1817834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08910 (SCI_1743) - 1807171..1808007 (+) 837 WP_006268080.1 putative RNA methyltransferase -
  SCI_RS08915 (SCI_1744) - 1808065..1808745 (-) 681 WP_006268016.1 rhomboid family intramembrane serine protease -
  SCI_RS08920 (SCI_1745) - 1808738..1809265 (-) 528 WP_006268553.1 5-formyltetrahydrofolate cyclo-ligase -
  SCI_RS08925 (SCI_1746) gltX 1809721..1811178 (-) 1458 WP_006268479.1 glutamate--tRNA ligase -
  SCI_RS08930 (SCI_1747) radA 1811416..1812834 (-) 1419 WP_148290517.1 DNA repair protein RadA Machinery gene
  SCI_RS08935 (SCI_1748) - 1812794..1813237 (-) 444 WP_006268335.1 dUTP diphosphatase -
  SCI_RS08940 (SCI_1749) - 1813331..1814365 (-) 1035 WP_006268236.1 S66 peptidase family protein -
  SCI_RS11025 - 1814584..1814763 (-) 180 Protein_1775 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SCI_RS08945 (SCI_1750) - 1814848..1815864 (+) 1017 WP_006268051.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SCI_RS08950 (SCI_1751) galU 1815890..1816789 (+) 900 WP_006268010.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 51656.52 Da        Isoelectric Point: 6.2789

>NTDB_id=61627 SCI_RS08930 WP_148290517.1 1811416..1812834(-) (radA) [Streptococcus constellatus subsp. pharyngis C1050]
MVCGQVVLEALGIKKEESIIAKKKSTFVCQNCEYHSPKYLGRCPNCGTWSSFVEEVEVAEVKNARVSLTGEKTRPMKLAE
VTSIDVKRTKTDMDEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHKGTVLYVSGEESAEQIKLRAERLGDID
SEFYLYAETNMQHIRAEIEKIKPDFLIIDSIQTIVSPEISSMQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLA
GPRTLEHMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTR
PILAEVQALVTPTMFGNAKRTTAGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEK
PTNPQECYIGEIGLTGEIRRVNRIEQRITEAVKLGFTKIYVPKNSLNGLNIPDKTEVIGVTTIGEVLKKVFG

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=61627 SCI_RS08930 WP_148290517.1 1811416..1812834(-) (radA) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGTGTGCGGACAGGTGGTTTTGGAAGCACTGGGCATTAAGAAAGAGGAATCTATCATAGCCAAGAAAAAATCGACATT
TGTTTGTCAAAATTGTGAATACCATTCGCCCAAGTATCTGGGGCGTTGTCCGAATTGTGGTACTTGGTCGTCTTTTGTAG
AAGAAGTAGAAGTGGCAGAAGTCAAAAATGCGCGTGTTTCTCTGACCGGAGAAAAAACACGACCGATGAAATTGGCAGAA
GTAACTTCTATTGATGTGAAGCGCACCAAGACGGATATGGACGAATTTAACCGCGTTTTAGGCGGTGGTGTGGTGCCGGG
AAGTTTAGTTCTAATCGGAGGAGATCCCGGTATTGGGAAATCGACACTTTTATTGCAGGTTTCAACCCAACTCTCTCACA
AGGGAACGGTTCTTTATGTCAGCGGCGAGGAGTCTGCTGAGCAGATTAAACTGCGAGCTGAGCGATTAGGAGATATTGAT
AGTGAATTTTATCTCTATGCCGAGACCAATATGCAGCATATTCGTGCCGAGATTGAAAAAATCAAACCGGATTTTTTGAT
TATCGATTCCATTCAGACGATTGTGTCGCCAGAAATTTCCAGCATGCAGGGCTCGGTTTCGCAAGTGCGGGAGGTGACAG
CAGAACTCATGCAGTTGGCGAAAACCAACAATATTGCCACCTTTATCGTGGGTCATATGACCAAGGAAGGAACGCTGGCT
GGTCCACGAACGCTAGAGCATATGGTGGATACAGTGCTGTATTTTGAAGGAGAACGTCAGCATACTTTCCGTATTTTGCG
GGCAGTTAAAAATCGTTTCGGTTCGACCAACGAAATCGGCATTTTTGAGATGCAGTCAGGTGGTCTGGTTGAAGTGCTCA
ATCCTAGTCAGGTTTTCTTAGAGGAGCGTTTAGATGGTGCGACAGGCTCTTCTATCGTGGTGACGATGGAGGGGACACGA
CCGATTTTGGCGGAAGTGCAGGCTCTGGTGACACCGACCATGTTTGGCAATGCCAAGCGGACAACGGCAGGTCTGGACTT
CAATCGTGCCAGCCTGATTATGGCTGTTTTGGAGAAACGAGCTGGTTTGCTTCTGCAAAATCAAGATGCTTATCTCAAAT
CAGCTGGTGGTGTGCGCTTAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAG
CCAACCAACCCTCAAGAATGTTATATTGGCGAAATTGGTTTGACAGGCGAAATCCGCCGTGTCAATCGCATTGAGCAGCG
CATCACCGAAGCTGTTAAGTTAGGCTTCACAAAAATTTATGTTCCTAAAAACTCTTTGAACGGATTGAATATTCCCGACA
AGACTGAAGTTATTGGTGTGACAACGATTGGTGAAGTATTGAAAAAGGTGTTTGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(27-54)

AAA domain (AAA_25)

(84-237)

Subunit ChlI of Mg-chelatase (ChlI)

(381-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.508

95.975

0.869
  radA Streptococcus pneumoniae D39

90.508

95.975

0.869
  radA Streptococcus pneumoniae R6

90.508

95.975

0.869
  radA Streptococcus pneumoniae TIGR4

90.508

95.975

0.869
  radA Streptococcus mitis SK321

90.508

95.975

0.869
  radA Streptococcus mitis NCTC 12261

90.287

95.975

0.867
  radA Bacillus subtilis subsp. subtilis str. 168

61.269

96.822

0.593

Multiple sequence alignment