Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG307_RS14125 Genome accession   NZ_CP085237
Coordinates   2706017..2707723 (-) Length   568 a.a.
NCBI ID   WP_404443092.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ADH2-198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2701017..2712723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG307_RS14100 (LG307_14030) - 2702005..2702247 (+) 243 WP_404443077.1 DUF2627 domain-containing protein -
  LG307_RS14105 (LG307_14035) - 2702275..2703000 (-) 726 WP_404443080.1 glycerophosphodiester phosphodiesterase -
  LG307_RS14110 (LG307_14040) - 2703093..2703248 (+) 156 WP_404443083.1 YycC family protein -
  LG307_RS14115 (LG307_14045) spo0A 2703381..2704169 (-) 789 WP_404443086.1 sporulation transcription factor Spo0A -
  LG307_RS14120 (LG307_14050) spoIVB 2704443..2705738 (-) 1296 WP_404443089.1 SpoIVB peptidase -
  LG307_RS14125 (LG307_14055) recN 2706017..2707723 (-) 1707 WP_404443092.1 DNA repair protein RecN Machinery gene
  LG307_RS14130 (LG307_14060) ahrC 2707746..2708195 (-) 450 WP_404443095.1 transcriptional regulator AhrC/ArgR -
  LG307_RS14135 (LG307_14065) - 2708297..2709133 (-) 837 WP_404443097.1 TlyA family RNA methyltransferase -
  LG307_RS14140 (LG307_14070) dxs 2709140..2711032 (-) 1893 WP_404443100.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG307_RS14145 (LG307_14075) - 2711055..2711654 (-) 600 WP_404443103.1 hypothetical protein -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 64238.03 Da        Isoelectric Point: 4.9343

>NTDB_id=616227 LG307_RS14125 WP_404443092.1 2706017..2707723(-) (recN) [Sutcliffiella horikoshii strain ADH2-198]
MIAELTIKNFAIIESLSVSFDKGLTVLTGETGAGKSIIIDAIHLLAGGRGSHEFVRFGEKRAELEGLFLLEDTNHPAYKV
CQELGIEIEDEMVVLRREIHATGKSVCRVNGKLVTIALLREVGQTLVDIHGQHEHQELMDPDLHLSLLDQFGGVAVQKEL
KEYRNIYTSFKDVEKRLLELTENEQKVAHRLDLLQFQAEEISNAQLTVNEEDELLEERNKISNYERLYQSLNNCYYAMHG
EQKGLDWVGQAMSESEGLEEIDKKLKDVHEIISNSYYQLEELSYRIRDEIDQLEFDPNRLDFIEGRLNEIKQLKRKYGST
VAEVLEYASKIEEELETLQNRDSHIHQLQESLESLKQDLALEAKSLTDARRKASEKLMKSIHKELKDLYLEKAIFDVNMD
VKKEKASGEVVFGKNGVDVVEFYLTTNPGEPLKPMAKVASGGELSRIMLALKSIFSRHQGITSIIFDEVDTGVSGRVAQA
IAEKIYQVSVDSQVLCISHLPQVAAMSDTHLFISKEVSGERTKTKVRGLDQDEKVREIGRMISGVEITSLTKEHARELLE
IAGSIKQG

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=616227 LG307_RS14125 WP_404443092.1 2706017..2707723(-) (recN) [Sutcliffiella horikoshii strain ADH2-198]
ATGATTGCAGAGTTGACCATAAAGAATTTTGCTATTATTGAATCCCTTTCAGTTTCTTTTGACAAGGGGCTAACCGTTTT
AACAGGGGAAACCGGAGCAGGTAAATCCATAATCATCGATGCCATTCACTTATTGGCAGGTGGAAGAGGCTCCCACGAAT
TTGTCCGTTTTGGTGAAAAAAGAGCAGAGTTGGAGGGGCTATTCCTTCTTGAGGATACCAATCATCCTGCTTATAAAGTT
TGTCAGGAACTTGGTATAGAAATTGAAGATGAAATGGTCGTCTTAAGACGAGAAATCCATGCAACCGGCAAAAGTGTCTG
CCGTGTTAACGGCAAGCTTGTGACCATTGCCCTGTTAAGGGAAGTCGGGCAAACATTGGTGGATATTCATGGGCAGCATG
AACATCAAGAACTAATGGACCCAGATTTGCACCTATCTCTTTTAGATCAGTTTGGCGGAGTGGCTGTGCAAAAGGAACTT
AAAGAATATAGAAATATTTATACATCTTTTAAGGACGTCGAAAAAAGGTTGCTAGAACTCACAGAAAATGAACAAAAGGT
TGCGCATCGCCTTGATTTATTGCAGTTCCAGGCAGAAGAAATCAGCAACGCGCAATTAACCGTGAATGAAGAGGATGAGC
TGCTCGAGGAACGAAATAAAATCAGCAACTACGAACGTCTATATCAATCGCTTAACAACTGTTACTATGCGATGCATGGT
GAACAAAAGGGGCTTGATTGGGTCGGACAAGCCATGTCTGAATCCGAGGGTCTGGAGGAAATCGATAAAAAACTTAAAGA
TGTTCACGAAATTATCTCTAATTCTTATTATCAATTGGAAGAGCTCTCTTACCGCATTAGAGATGAAATAGATCAGCTTG
AATTTGATCCAAACCGTCTTGATTTTATTGAAGGAAGGTTAAATGAGATTAAACAGCTAAAACGGAAATACGGCTCTACG
GTTGCTGAAGTTTTGGAATATGCTTCTAAGATAGAAGAGGAACTAGAGACGCTCCAAAACCGTGATTCGCACATACATCA
ACTTCAGGAGTCATTAGAGTCGCTCAAACAAGATCTTGCACTTGAAGCAAAATCTCTAACTGATGCACGTAGAAAAGCTT
CCGAGAAATTGATGAAAAGCATCCATAAAGAGCTAAAAGATCTGTATTTGGAAAAAGCGATCTTTGATGTGAACATGGAT
GTGAAAAAAGAAAAGGCATCCGGTGAGGTCGTGTTTGGTAAAAATGGTGTGGATGTTGTGGAGTTCTACCTTACTACAAA
CCCGGGAGAACCGTTAAAGCCAATGGCAAAAGTCGCCTCTGGCGGAGAGCTTTCAAGGATTATGCTTGCTTTGAAGAGTA
TTTTCTCCAGACATCAAGGAATCACTTCCATTATTTTTGATGAGGTTGATACAGGAGTCAGCGGCAGGGTGGCACAGGCT
ATCGCCGAGAAGATATATCAGGTCTCGGTTGATTCGCAAGTACTTTGTATCTCCCACTTACCTCAAGTCGCGGCTATGTC
AGACACCCATCTTTTCATCAGCAAGGAAGTATCCGGTGAGCGCACAAAAACGAAGGTGCGTGGGTTGGATCAGGACGAAA
AGGTCCGTGAAATTGGCCGGATGATTTCTGGTGTCGAGATTACTTCTTTGACGAAGGAGCATGCCCGTGAGTTATTGGAG
ATAGCGGGGAGTATTAAGCAGGGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.408

100

0.6