Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG307_RS06985 Genome accession   NZ_CP085237
Coordinates   1321317..1322279 (+) Length   320 a.a.
NCBI ID   WP_404449299.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ADH2-198     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316317..1327279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG307_RS06960 (LG307_06905) - 1316605..1317543 (+) 939 WP_404450402.1 ABC transporter ATP-binding protein -
  LG307_RS06965 (LG307_06910) - 1318404..1319618 (+) 1215 WP_404449293.1 putative glycoside hydrolase -
  LG307_RS06970 (LG307_06915) - 1319658..1319849 (-) 192 WP_404449295.1 hypothetical protein -
  LG307_RS06975 (LG307_06920) - 1320012..1320587 (+) 576 WP_404449296.1 GNAT family N-acetyltransferase -
  LG307_RS06980 (LG307_06925) - 1320711..1321154 (+) 444 WP_404449298.1 MarR family winged helix-turn-helix transcriptional regulator -
  LG307_RS06985 (LG307_06930) ceuB 1321317..1322279 (+) 963 WP_404449299.1 ABC transporter permease Machinery gene
  LG307_RS06990 (LG307_06935) - 1322263..1323219 (+) 957 WP_404449302.1 iron chelate uptake ABC transporter family permease subunit -
  LG307_RS06995 (LG307_06940) - 1323207..1323965 (+) 759 WP_404449303.1 ABC transporter ATP-binding protein -
  LG307_RS07000 (LG307_06945) - 1324125..1325093 (+) 969 WP_404449304.1 siderophore ABC transporter substrate-binding protein -
  LG307_RS07005 (LG307_06950) - 1325193..1325924 (-) 732 WP_404449306.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35551.01 Da        Isoelectric Point: 10.0435

>NTDB_id=616216 LG307_RS06985 WP_404449299.1 1321317..1322279(+) (ceuB) [Sutcliffiella horikoshii strain ADH2-198]
MKKRYLFILLITLSIISLFIGVTEIQPWKLWQGISEQQLQILLLSRIPRLLSIIIAGIGMSVCGLIMQQLTRNKFVSPTT
AGTMDSARLGVLVSLLLFSSAGMLLKASIAFFFALAGTFIFMKILDRIKFKDVIFIPLVGLMFGSIVGSITTFFAYKYDL
IQNMSSWLQGNFSLIIKGRYELLYISIPLLIITYLYANRFTVAGMGEDFSINLGLPYKQVVNIGLVIVAAVTSIVILTVG
MIPFLGLIVPNIVSIFRGDHLKENLPYTAMIGAIFVLACDILGRIIIYPYEIPIGLTVGVIGSALFLYLLFRRSTYETKA

Nucleotide


Download         Length: 963 bp        

>NTDB_id=616216 LG307_RS06985 WP_404449299.1 1321317..1322279(+) (ceuB) [Sutcliffiella horikoshii strain ADH2-198]
ATGAAGAAAAGGTATCTATTTATCTTGCTAATAACATTATCAATTATCTCTTTATTTATTGGAGTAACGGAAATACAGCC
TTGGAAATTGTGGCAGGGAATAAGTGAACAGCAACTTCAGATTCTTTTGCTTAGTAGAATTCCCAGACTGCTTAGCATAA
TTATCGCTGGTATAGGTATGAGTGTTTGTGGATTGATTATGCAACAGCTAACTAGGAACAAATTTGTCTCACCAACTACT
GCTGGAACGATGGACTCTGCAAGACTTGGAGTATTAGTTTCCCTTCTGCTTTTTTCTTCAGCTGGAATGTTACTAAAAGC
CTCCATTGCTTTTTTCTTTGCACTGGCTGGGACGTTTATTTTTATGAAGATTTTAGACAGGATAAAGTTCAAGGATGTCA
TTTTCATCCCTCTAGTGGGGCTAATGTTCGGAAGTATTGTAGGCTCCATCACCACATTTTTTGCTTATAAATATGATCTT
ATTCAAAATATGTCATCTTGGTTGCAGGGTAATTTCTCGCTAATTATTAAAGGAAGATACGAGTTGCTTTACATAAGTAT
TCCATTGCTTATCATTACATATCTTTATGCAAACAGATTTACCGTTGCAGGTATGGGAGAAGACTTCTCGATTAATTTAG
GACTGCCGTATAAACAGGTAGTAAACATTGGACTTGTCATTGTGGCAGCTGTGACGTCTATCGTCATCTTGACAGTAGGA
ATGATACCCTTCCTTGGCCTAATCGTCCCTAATATTGTAAGTATCTTTCGAGGAGATCATCTGAAAGAGAATCTGCCATA
CACTGCGATGATTGGAGCAATCTTTGTCCTTGCATGCGATATTCTCGGTAGAATTATCATTTATCCGTACGAAATACCAA
TTGGTCTGACTGTCGGCGTAATAGGTAGTGCGTTATTTCTTTATCTTTTGTTTAGGAGAAGTACATATGAAACTAAAGCA
TAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.548

98.125

0.516