Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NRF20_RS33670 Genome accession   NZ_CP102361
Coordinates   7352217..7354319 (-) Length   700 a.a.
NCBI ID   WP_398632224.1    Uniprot ID   -
Organism   Streptomyces sp. R-74717     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7347217..7359319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF20_RS33645 (NRF20_33605) - 7347299..7347658 (-) 360 WP_413753838.1 VOC family protein -
  NRF20_RS33650 (NRF20_33610) pgl 7347737..7348519 (-) 783 WP_413753839.1 6-phosphogluconolactonase -
  NRF20_RS33655 (NRF20_33615) opcA 7348516..7349529 (-) 1014 WP_398632222.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  NRF20_RS33660 (NRF20_33620) zwf 7349526..7351058 (-) 1533 WP_266362272.1 glucose-6-phosphate dehydrogenase -
  NRF20_RS33665 (NRF20_33625) tal 7351064..7352182 (-) 1119 WP_398632223.1 transaldolase -
  NRF20_RS33670 (NRF20_33630) recP/tkt 7352217..7354319 (-) 2103 WP_398632224.1 transketolase Machinery gene
  NRF20_RS33675 (NRF20_33635) - 7354764..7355717 (+) 954 WP_266362278.1 heme o synthase -
  NRF20_RS33680 (NRF20_33640) - 7355816..7356163 (+) 348 WP_398632225.1 hypothetical protein -
  NRF20_RS33685 (NRF20_33645) - 7356270..7357283 (-) 1014 WP_398632226.1 heme A synthase -
  NRF20_RS33690 (NRF20_33650) - 7357360..7358127 (-) 768 WP_398632227.1 ABC transporter permease -
  NRF20_RS33695 (NRF20_33655) - 7358124..7359050 (-) 927 WP_413753840.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75304.28 Da        Isoelectric Point: 5.2421

>NTDB_id=616164 NRF20_RS33670 WP_398632224.1 7352217..7354319(-) (recP/tkt) [Streptomyces sp. R-74717]
MSTKPTTTDLQWTELDQRAVDTVRVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADAEWTGRDRFVLSAGHSS
LTLYIQLYLAGYGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHMVWVIAGDGCLQEGISAEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTLKRYEAYGWHVQRVDQLPSGDLDP
AGLYKALQAAKAETERPSFIAARSIIAWPAPNAQNTEASHGSALGDEEVAATKKVLGFDPEKSFEVSDEVISHTREALDR
GREAKAEWEKAFAAWRTANPERAAEFDRISAGELPTGWEDKLPVFEPGKSVATRAASGKVLQQLGEVIPELWGGSADLAG
SNNTTIDKTSSFLPTGNPLPGADPYGRTIHFGIREHAMAAAMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
HVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETSIAWREILRRHTKVFGKGAPHGLALTRQGVPTYEANE
DAAKGGYVLFEAEGPEGQNTPPQVLLIGTGSEVHLAVEAREELQAAGIPTRVVSMPSVEWFEEQDQAYKDSVLPPSVKAR
VAVEAGIGLTWHRYVGDAGRIVSLEHFGASADAKVLFREFGFTGERVAAAARESLAAATR

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=616164 NRF20_RS33670 WP_398632224.1 7352217..7354319(-) (recP/tkt) [Streptomyces sp. R-74717]
GTGAGCACCAAGCCGACCACCACAGACCTCCAGTGGACCGAATTGGACCAGCGGGCCGTGGACACTGTCCGCGTCCTTGC
CGCCGACGCCGTACAGAAGGTCGGAAACGGCCACCCGGGCACGGCGATGAGCCTGGCTCCCGCCGCGTACACCCTCTTCC
AGAAGGTGATGCGGCACGACCCCGCCGACGCGGAGTGGACCGGTCGCGACCGGTTCGTGCTCTCTGCGGGTCACAGCAGC
CTGACCCTCTACATCCAGCTCTACCTGGCCGGCTACGGCCTGGAGCTCGATGACCTCAAGGCTTTCCGCACCTGGGGCTC
GAAGACCCCCGGTCACCCGGAGTACGGCCACACCACCGGCGTCGAGACGACCACGGGGCCGCTGGGCCAGGGCGTCGCCA
ACGCGGTGGGCATGGCAATGGCCGCCCGCTACGAGCGTGGCCTGTTCGACCCGGAGGCGGCCCCCGGCACCTCCCCGTTC
GACCACATGGTCTGGGTCATCGCCGGCGACGGCTGCCTCCAGGAGGGCATCTCCGCGGAGGCGTCCTCGCTGGCCGGGCA
CCAGAAGCTCGGCAACCTGGTCCTGCTGTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACCGCGGTCTCCG
AGGACACCCTGAAGCGGTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCGACCAGCTGCCCAGCGGCGACCTGGACCCG
GCGGGTCTGTACAAGGCGCTGCAGGCCGCCAAGGCCGAGACCGAGCGCCCGTCGTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCCCAGAACACCGAGGCCTCGCACGGATCTGCGCTCGGTGACGAAGAGGTCGCCGCGACGAAGA
AGGTCCTCGGCTTCGACCCGGAGAAGTCCTTCGAGGTTTCCGACGAGGTCATCTCCCACACCCGTGAGGCGCTGGACCGC
GGCCGCGAGGCCAAGGCCGAATGGGAGAAGGCGTTCGCCGCCTGGCGCACCGCCAACCCTGAGCGCGCCGCCGAGTTCGA
CCGGATCTCCGCGGGCGAGCTGCCCACGGGCTGGGAGGACAAGCTTCCGGTCTTCGAGCCGGGCAAGAGCGTCGCCACCC
GCGCCGCCTCCGGCAAGGTGCTCCAGCAGCTCGGCGAGGTCATCCCCGAGCTCTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACCACGATCGACAAGACGTCGTCGTTCCTCCCGACGGGCAACCCGCTGCCCGGCGCGGACCCGTACGGCCG
CACGATCCACTTCGGTATCCGCGAGCACGCCATGGCCGCGGCCATGAACGGCATCGCGCTGCACGGCAACACGCGCATCT
ACGGCGGCACTTTCCTGGTCTTCTCCGACTACATGCGCAACGCCGTGCGCCTGTCCGCGCTGATGCACCTGCCGGTGACC
CACGTGTGGACGCACGACTCGATCGGTCTCGGCGAGGACGGCCCGACCCACCAGCCGGTGGAGCACCTGGCCTCGCTGCG
CGCCATCCCGGGTCTGAACATCGTCCGCCCGGCCGACGCCAACGAGACCTCTATCGCCTGGCGCGAGATCCTGCGCCGCC
ACACCAAGGTGTTCGGCAAGGGAGCCCCGCACGGTCTGGCGCTGACCCGCCAGGGCGTGCCGACCTACGAGGCGAACGAG
GACGCGGCCAAGGGCGGCTACGTGCTCTTCGAGGCCGAAGGGCCCGAAGGGCAGAACACGCCGCCCCAGGTCCTCCTGAT
CGGTACGGGCTCCGAGGTGCACCTCGCCGTCGAGGCGCGCGAGGAGCTGCAGGCCGCCGGTATCCCGACCCGTGTGGTCT
CGATGCCGTCGGTCGAGTGGTTCGAGGAGCAGGACCAGGCTTACAAGGACAGTGTTCTGCCGCCGTCCGTGAAGGCCCGG
GTCGCGGTCGAGGCCGGTATCGGTCTGACCTGGCACCGGTACGTCGGAGACGCCGGCCGGATCGTCTCGCTGGAGCACTT
CGGTGCTTCCGCCGACGCCAAGGTCCTCTTCCGCGAGTTCGGCTTCACGGGCGAGCGCGTCGCCGCCGCCGCGCGGGAAT
CTCTCGCCGCCGCCACACGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(582-687)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.242

97.571

0.441