Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   NRF20_RS32285 Genome accession   NZ_CP102361
Coordinates   7044137..7045213 (-) Length   358 a.a.
NCBI ID   WP_398629701.1    Uniprot ID   -
Organism   Streptomyces sp. R-74717     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 7039137..7050213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF20_RS32265 (NRF20_32230) cobT 7040321..7041433 (-) 1113 WP_398629704.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  NRF20_RS32270 (NRF20_32235) - 7041529..7042368 (-) 840 WP_398629703.1 class I SAM-dependent methyltransferase -
  NRF20_RS32275 (NRF20_32240) - 7042438..7043640 (-) 1203 WP_413753771.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  NRF20_RS32280 (NRF20_32245) - 7043769..7043978 (+) 210 WP_093893560.1 hypothetical protein -
  NRF20_RS32285 (NRF20_32250) htrA 7044137..7045213 (-) 1077 WP_398629701.1 S1C family serine protease Regulator
  NRF20_RS32290 (NRF20_32255) - 7045307..7046041 (-) 735 WP_398629747.1 class I SAM-dependent methyltransferase -
  NRF20_RS32295 (NRF20_32260) - 7046149..7046748 (-) 600 WP_266361879.1 DUF3043 domain-containing protein -
  NRF20_RS32300 (NRF20_32265) - 7047045..7047827 (+) 783 WP_093893567.1 PspA/IM30 family protein -
  NRF20_RS32305 (NRF20_32270) pspAA 7047837..7048115 (+) 279 WP_266361880.1 PspA-associated protein PspAA -
  NRF20_RS32310 (NRF20_32275) - 7048288..7049547 (+) 1260 WP_413753772.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 36205.14 Da        Isoelectric Point: 6.2714

>NTDB_id=616160 NRF20_RS32285 WP_398629701.1 7044137..7045213(-) (htrA) [Streptomyces sp. R-74717]
MDASHSRSRVRRLLLPLTAGVCAAALVSGCSDANSDSPTARPTTSASASRAVADLQNEYQDVIKNVLPSVVQIEASNSLG
SGVIYDTEGHIVTNAHVVGNEKTFKVTVATGEKVVRASLVAAYPEQDLAVIKLAGVPEGLKPAKFGDSEKVEVGQIVLAM
GSPLGLSSSVTQGIVSALGRTVSEGRAGGGTGATIANMVQTSAAINPGNSGGALVNLNSEVIGIPTLGAIDPQMGDSAAP
GIGFAIPVSMVKTIADQIIKSGKVTDSGRAALNITGRTVVDDTYRPVGVALVGVTKGGAADKAGLRVGDVITKVADVRVP
TITSLSEALASDKPGEKVTVTYLRDGAEKTAQVTLGEI

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=616160 NRF20_RS32285 WP_398629701.1 7044137..7045213(-) (htrA) [Streptomyces sp. R-74717]
ATGGATGCATCCCACTCCCGCAGCCGTGTACGCCGTCTGCTGCTGCCTCTGACCGCAGGTGTCTGCGCAGCCGCCCTGGT
GAGCGGCTGCTCGGACGCGAACTCCGATTCTCCGACGGCCCGACCCACCACGTCGGCCTCCGCTTCCCGGGCCGTCGCCG
ATCTGCAGAACGAATACCAGGACGTGATCAAGAACGTCCTGCCGTCGGTCGTGCAGATCGAAGCCTCCAACAGCCTGGGC
TCGGGCGTCATCTACGACACCGAGGGCCATATCGTCACCAACGCCCATGTGGTCGGCAACGAGAAGACGTTCAAGGTCAC
CGTCGCCACCGGCGAGAAGGTGGTGCGGGCCTCGCTGGTCGCCGCCTATCCGGAACAGGATCTGGCCGTCATCAAGCTCG
CCGGCGTCCCGGAAGGGCTGAAGCCCGCGAAGTTCGGGGACTCGGAGAAGGTCGAGGTGGGACAGATCGTGCTGGCGATG
GGCTCGCCGCTCGGGCTGTCCTCCAGCGTCACCCAGGGCATCGTCTCGGCGCTCGGCCGGACCGTCAGCGAAGGCCGCGC
GGGCGGTGGCACGGGCGCGACGATCGCGAACATGGTGCAGACCTCGGCGGCGATCAACCCGGGCAACAGCGGCGGTGCGC
TGGTCAATCTGAACAGCGAGGTGATCGGCATCCCGACGCTGGGGGCGATCGACCCGCAGATGGGTGACAGTGCGGCACCG
GGGATCGGGTTCGCGATCCCCGTGTCGATGGTGAAGACGATCGCCGATCAGATCATCAAGAGCGGCAAGGTCACCGACTC
GGGCCGGGCGGCGCTGAACATCACCGGACGCACGGTCGTCGACGACACCTACCGTCCGGTCGGGGTGGCGCTGGTCGGCG
TGACGAAGGGCGGCGCCGCGGACAAGGCGGGGCTGCGGGTCGGCGATGTCATCACCAAGGTCGCAGATGTGCGGGTCCCG
ACGATCACGTCCCTGTCGGAGGCACTGGCCTCGGACAAGCCGGGCGAGAAGGTCACGGTGACGTATCTGCGCGACGGGGC
GGAGAAGACGGCGCAGGTCACTCTGGGCGAGATCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

34.474

100

0.366