Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   NRF20_RS12310 Genome accession   NZ_CP102361
Coordinates   2766620..2767414 (+) Length   264 a.a.
NCBI ID   WP_093898912.1    Uniprot ID   -
Organism   Streptomyces sp. R-74717     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2761620..2772414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF20_RS12295 (NRF20_12235) - 2761806..2762342 (+) 537 WP_398630461.1 TerD family protein -
  NRF20_RS12300 (NRF20_12240) - 2762507..2765410 (-) 2904 WP_266357293.1 vitamin B12-dependent ribonucleotide reductase -
  NRF20_RS12305 (NRF20_12245) nrdR 2765573..2766085 (-) 513 WP_398630460.1 transcriptional regulator NrdR -
  NRF20_RS12310 (NRF20_12250) dinR/lexA 2766620..2767414 (+) 795 WP_093898912.1 transcriptional repressor LexA Regulator
  NRF20_RS12315 (NRF20_12255) - 2767498..2769468 (-) 1971 WP_398630459.1 ATP-dependent DNA helicase -
  NRF20_RS12320 (NRF20_12260) - 2769519..2771423 (-) 1905 WP_398630458.1 IucA/IucC family protein -
  NRF20_RS12325 (NRF20_12265) - 2771484..2772290 (-) 807 WP_398630457.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28624.36 Da        Isoelectric Point: 6.9854

>NTDB_id=616109 NRF20_RS12310 WP_093898912.1 2766620..2767414(+) (dinR/lexA) [Streptomyces sp. R-74717]
MTTTADSATITAQDRSQSRLEPVHAMNDSVTNTEGPEPVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=616109 NRF20_RS12310 WP_093898912.1 2766620..2767414(+) (dinR/lexA) [Streptomyces sp. R-74717]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCAGAGCCCGTGCGCCCGGCGCGCTCGTTGCCCGGCCGACCTCCAGGTATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTGATCCGGGACTCCGTGCAGCGGCGTGGCTACCCG
CCCTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCACATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGTCGCGACCCACATCGCCCGCGGGCGTACGAGGTGCGCGGATCGGACCAGCCCAGCTCGCAGCCCA
CCGATACCACAGGAAAGCCCGCGGCGTCGTATGTGCCGCTGGTCGGCCGGATCGCAGCCGGTGGCCCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAACTGGTCGGTGACGGAGAGCTGTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTGCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTGTGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCGGGCGACGAGGCGACAATTCTCGGCAAGGTGGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375