Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NRF20_RS04005 Genome accession   NZ_CP102361
Coordinates   857425..859512 (-) Length   695 a.a.
NCBI ID   WP_398632040.1    Uniprot ID   -
Organism   Streptomyces sp. R-74717     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 852425..864512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRF20_RS03990 (NRF20_03960) opcA 853670..854605 (-) 936 WP_398632038.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  NRF20_RS03995 (NRF20_03965) zwf 854602..856179 (-) 1578 WP_413754519.1 glucose-6-phosphate dehydrogenase -
  NRF20_RS04000 (NRF20_03970) tal 856269..857405 (-) 1137 WP_413754520.1 transaldolase -
  NRF20_RS04005 (NRF20_03975) recP/tkt 857425..859512 (-) 2088 WP_398632040.1 transketolase Machinery gene
  NRF20_RS04010 (NRF20_03980) - 859658..860602 (+) 945 WP_398632041.1 helix-turn-helix domain-containing protein -
  NRF20_RS04015 (NRF20_03985) - 861237..861668 (+) 432 WP_398632042.1 hypothetical protein -
  NRF20_RS04020 (NRF20_03990) - 861908..863479 (+) 1572 WP_398632043.1 N,N-dimethylformamidase beta subunit family domain-containing protein -
  NRF20_RS04025 (NRF20_03995) - 863484..863633 (+) 150 WP_398632044.1 hypothetical protein -
  NRF20_RS04030 (NRF20_04000) - 863777..864031 (-) 255 WP_398632045.1 hypothetical protein -
  NRF20_RS04035 (NRF20_04005) - 864064..864258 (-) 195 WP_398632046.1 hypothetical protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74461.04 Da        Isoelectric Point: 4.6966

>NTDB_id=616090 NRF20_RS04005 WP_398632040.1 857425..859512(-) (recP/tkt) [Streptomyces sp. R-74717]
MSTQIPDSFPDGFEWTELDRRAVDTARLLAADAVQQVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPEWTGRDRFVLSPG
HTSLTLYTQLFLSGYELELDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAQEGE
SPFDHTIWAIVSDGDLEEGISAEASSLAGHQKLGNLVFVYDDNHISIEGDTATAFSEDVLKRYEAYGWHVQRIEPSADGD
IDVRALYGALTAARAETGRPSIIAMRTIIAWPAPNAQNTEASHGSALGAEEIAATKRVLGFDPEQTFQVEPEVLAHAREA
LDRGAEAHAAWDKQIAEWRTAGPEYAKLLDRVVAGQLPEGWEAALPQFEAGTSVATRAASGKVLQALGGVIPELWGGSAD
LAGSNNTTIDKTSSFLPKGNPLPEADPYGRTVHFGIREHSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMQL
PVTYVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETALAWAEILKRHATNPAPHGLALTRQGVPTYEANP
EAVKGGYVLRDSSAETPDVILIATGSEVQLAVAARELLEAEGVGTRVVSMPSVEWFEEQSAEYRASVLPASVKARVAVEA
GIGLTWYRYVGDAGRIVSIEHFGASADARTLFAEYGFTAENVASAARESLAAARG

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=616090 NRF20_RS04005 WP_398632040.1 857425..859512(-) (recP/tkt) [Streptomyces sp. R-74717]
ATGAGCACGCAGATACCCGACAGCTTCCCTGACGGATTCGAGTGGACCGAACTCGACCGGCGTGCCGTCGACACCGCCCG
CCTTCTGGCGGCCGATGCCGTACAGCAGGTCGGAAACGGCCATCCGGGCACCGCGATGAGCCTGGCGCCGGCCGCGTACA
CCCTCTTTCAGAAGGTGATGCGGCACGACCCGGCAGACCCGGAGTGGACCGGCCGCGACCGCTTCGTCCTCTCCCCGGGC
CACACCTCGCTGACCCTGTACACCCAGCTGTTCCTCTCCGGGTACGAGCTGGAGCTGGACGATCTGAAGGCGTTCCGTAC
GCACGGTTCGAAGACGCCCGGTCACCCTGAGTACGGGCACACCGCGGGCGTCGAGACGACCACCGGTCCGCTCGGCCAGG
GTGTCGCGAACGCCGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCCGAGGCGCAGGAGGGCGAG
TCCCCCTTCGACCACACCATCTGGGCGATCGTTTCGGACGGCGACCTGGAGGAGGGCATCTCCGCCGAGGCCTCGTCCCT
TGCGGGTCACCAGAAGCTCGGCAACCTCGTCTTCGTCTACGACGACAACCACATCTCCATCGAGGGCGACACGGCAACCG
CCTTCTCCGAGGACGTCCTGAAGCGGTACGAGGCGTACGGCTGGCACGTCCAGCGGATCGAGCCCTCGGCCGACGGCGAC
ATCGACGTCCGAGCGCTGTACGGGGCGCTGACCGCCGCCCGCGCCGAGACCGGGCGCCCCTCGATCATCGCGATGCGCAC
GATCATTGCCTGGCCCGCCCCCAACGCGCAGAACACCGAGGCTTCGCACGGTTCGGCGCTCGGCGCCGAGGAGATCGCGG
CCACCAAGCGGGTCCTGGGCTTCGACCCGGAGCAGACCTTCCAGGTGGAGCCCGAGGTACTGGCCCATGCTCGCGAGGCC
CTCGACCGCGGCGCCGAGGCGCATGCTGCCTGGGACAAGCAGATCGCCGAGTGGCGCACCGCCGGCCCCGAGTACGCCAA
GCTGTTGGACCGCGTCGTCGCCGGTCAGCTGCCCGAGGGCTGGGAGGCCGCTCTGCCGCAGTTCGAGGCGGGCACATCCG
TCGCGACCCGTGCCGCGTCCGGCAAGGTGCTGCAGGCGCTCGGCGGTGTGATCCCCGAGCTGTGGGGCGGCTCCGCCGAC
CTCGCCGGTTCGAACAACACGACGATCGACAAGACCAGCTCCTTCCTGCCGAAGGGCAACCCGTTGCCGGAGGCCGACCC
GTACGGCCGCACGGTCCACTTCGGTATCCGCGAGCACTCGATGGCCGCCGAGATGAACGGCATCGCGCTGCACGGCAACA
CCCGCATCTACGGCGGCACCTTCCTGGTCTTCTCCGACTACATGCGCAACGCCGTGCGCCTGTCCGCGCTGATGCAGCTC
CCGGTCACGTACGTCTGGACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTGGC
CTCGCTGCGCGCCATCCCCGGCCTGAACATCGTCCGCCCGGCCGACGCCAACGAGACCGCGCTCGCCTGGGCCGAGATCC
TCAAGCGGCACGCCACGAACCCGGCTCCGCACGGCCTCGCGCTCACGCGCCAGGGTGTACCGACGTACGAGGCGAACCCC
GAGGCGGTGAAGGGCGGTTACGTCCTGCGTGACTCCTCCGCCGAGACCCCTGACGTCATCCTCATCGCCACCGGCTCCGA
GGTGCAGCTCGCCGTCGCGGCGCGTGAACTGCTCGAGGCCGAGGGGGTCGGTACGCGTGTCGTGTCGATGCCGTCCGTCG
AGTGGTTCGAGGAGCAGTCCGCGGAGTACCGCGCGAGCGTGCTTCCGGCGTCCGTGAAGGCCCGCGTGGCCGTCGAGGCG
GGGATCGGCCTGACCTGGTACCGGTACGTCGGTGACGCCGGACGCATCGTCTCCATCGAGCACTTCGGCGCCTCCGCCGA
CGCCAGGACCCTGTTCGCCGAGTACGGCTTCACCGCCGAGAACGTCGCCTCCGCCGCGCGGGAATCTCTCGCCGCAGCGC
GTGGTTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(574-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(373-551)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(19-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.086

97.41

0.449