Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SCI_RS08125 Genome accession   NC_022238
Coordinates   1630763..1632529 (-) Length   588 a.a.
NCBI ID   WP_006268071.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625763..1637529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08105 (SCI_1589) - 1626627..1628024 (+) 1398 WP_020998019.1 glycoside hydrolase family 1 protein -
  SCI_RS08110 (SCI_1590) - 1628158..1628478 (-) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  SCI_RS08115 (SCI_1591) - 1628489..1628803 (-) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  SCI_RS08120 (SCI_1592) rcrQ 1629013..1630773 (-) 1761 WP_020998020.1 ABC transporter ATP-binding protein Regulator
  SCI_RS08125 (SCI_1593) rcrP 1630763..1632529 (-) 1767 WP_006268071.1 ABC transporter ATP-binding protein Regulator
  SCI_RS08130 (SCI_1594) - 1632522..1632980 (-) 459 WP_006268244.1 MarR family winged helix-turn-helix transcriptional regulator -
  SCI_RS08135 (SCI_1595) - 1633101..1634288 (-) 1188 WP_006268214.1 NADH-dependent flavin oxidoreductase -
  SCI_RS08140 (SCI_1596) - 1634555..1634965 (-) 411 WP_006268326.1 peptide deformylase -
  SCI_RS08145 (SCI_1597) scrK 1635031..1635930 (-) 900 WP_020998021.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 65230.03 Da        Isoelectric Point: 7.4109

>NTDB_id=61609 SCI_RS08125 WP_006268071.1 1630763..1632529(-) (rcrP) [Streptococcus constellatus subsp. pharyngis C1050]
MVKLFKRLTVKEVGMIIISILFTCLAVYLDLEVPTYISKITELLQTKGTVVSDLWNPGLKMIGLSFASFLSAVVVGFIAA
RLAASFTTSLRSDIFNRVLDYSNAEIKRFSIPSLLTRTTNDLTQIQLMITMGLQVVTRGPIMAIWAITKIIGKSEYWLWA
VIVAVIVNMIMTTVLMTLAFPKQSVIQRLTDKLNSITRESLTGIRVVRAYNAEDYQDDKFAGANDEVTRLNLFVSRLMAI
LNPIMMGISSGLTLAIYWIGAYLIQDAALPGRLPIFSDMVVFMSYAMQVVMGFMLMAALFIVLPRTLVSAGRINEVLDLH
STIESPMQPKTAKDVKGEVVFDNVSFRYTKNSEAVIEHVSFTAKAGETVAFIGSTGSGKSTLISLIPRFYDVTEGRILVD
GVNVKDYQLEDLHNKIGYIPQKAVLFSGDIKSNLDFGQSNESPLDDEKMWSALDLAQARSFVEEKEGGLHSEVAQSGTNF
SGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILREELAKKVKATTRLIVAQRISTIMDADQILVLDKGKVVGQGT
HKELLATNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=61609 SCI_RS08125 WP_006268071.1 1630763..1632529(-) (rcrP) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGTTAAATTGTTTAAACGTTTAACTGTCAAAGAAGTAGGGATGATTATCATCAGTATCTTATTTACTTGTTTGGCAGT
TTATTTGGACTTAGAGGTTCCAACCTATATTTCAAAAATTACGGAACTCCTACAGACGAAAGGAACAGTCGTTTCTGATT
TGTGGAATCCGGGCTTGAAAATGATTGGATTGTCATTTGCTAGTTTTCTCAGTGCTGTGGTAGTTGGTTTTATTGCGGCT
AGATTGGCAGCTAGCTTTACAACGAGCTTGCGCTCAGATATTTTCAATCGTGTACTGGATTATTCAAATGCTGAGATTAA
GAGATTTTCTATTCCAAGTCTTTTAACGCGGACAACCAATGATCTTACGCAAATTCAGCTTATGATTACTATGGGCTTGC
AAGTCGTGACTCGTGGGCCGATTATGGCGATTTGGGCGATTACAAAAATCATTGGGAAATCAGAATACTGGCTGTGGGCA
GTTATTGTCGCAGTTATTGTGAATATGATTATGACGACAGTTTTGATGACGTTGGCCTTTCCAAAGCAATCTGTTATTCA
ACGGTTGACTGATAAGTTAAATAGTATTACGCGTGAAAGTCTAACAGGGATTCGTGTTGTTCGGGCTTACAATGCTGAAG
ACTATCAGGATGATAAATTTGCAGGGGCAAATGATGAAGTGACTCGGTTGAATCTCTTTGTTAGTCGGCTCATGGCTATT
TTAAATCCAATTATGATGGGGATTTCGAGTGGTTTGACCTTGGCAATATACTGGATTGGTGCTTACTTGATTCAAGATGC
AGCTTTACCAGGACGTTTGCCAATCTTTAGCGACATGGTTGTCTTTATGTCCTATGCTATGCAGGTTGTAATGGGCTTCA
TGCTCATGGCTGCTCTGTTTATCGTTCTTCCTCGTACCTTGGTGTCTGCGGGACGGATTAATGAGGTACTTGATTTGCAT
TCAACGATTGAATCTCCAATGCAACCCAAAACAGCTAAAGATGTCAAAGGTGAAGTGGTATTTGACAATGTTTCTTTCCG
CTATACTAAAAACTCTGAGGCTGTCATTGAACATGTTAGCTTTACAGCTAAAGCGGGCGAAACGGTAGCTTTCATCGGAT
CAACTGGTTCTGGGAAATCAACCCTAATTAGTTTAATTCCTCGTTTCTATGATGTGACAGAAGGAAGAATTTTAGTAGAT
GGCGTGAATGTAAAAGATTATCAGTTGGAAGATTTGCATAATAAAATTGGCTACATTCCACAAAAAGCTGTTCTCTTTTC
TGGTGATATAAAGAGTAATTTAGATTTTGGACAAAGCAATGAAAGTCCATTGGATGATGAAAAAATGTGGTCTGCGTTGG
ACTTGGCACAGGCGAGATCATTTGTTGAAGAAAAAGAAGGTGGTCTGCACTCAGAGGTCGCACAAAGCGGAACCAATTTC
TCTGGTGGTCAAAAGCAGCGGCTGGCGATTGCGCGTGCACTTGCTAGGAAACCTGAAATTCTGATTTTTGACGATTCATT
TTCAGCACTGGACTATAAGACAGACCGTATTTTGCGAGAAGAATTGGCGAAAAAAGTGAAAGCTACAACCAGATTGATCG
TAGCTCAGCGGATTTCAACGATCATGGATGCTGATCAGATCTTGGTGTTGGATAAAGGGAAAGTTGTTGGGCAAGGAACT
CACAAAGAGCTGCTAGCGACAAACGAAGTTTATCAAGAAATTGCTTACTCACAATTATCAAAGGAGGAATTGGAAAATGG
AAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-506)

ABC transporter transmembrane region (ABC_membrane)

(16-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

70.5

100

0.719

Multiple sequence alignment