Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   M6G09_RS30785 Genome accession   NZ_CP102359
Coordinates   7014456..7016552 (-) Length   698 a.a.
NCBI ID   WP_277724176.1    Uniprot ID   -
Organism   Streptomyces sp. B146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7009456..7021552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G09_RS30770 (M6G09_30820) opcA 7010512..7011447 (-) 936 WP_194275059.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  M6G09_RS30775 (M6G09_30825) zwf 7011444..7013231 (-) 1788 WP_277724178.1 glucose-6-phosphate dehydrogenase -
  M6G09_RS30780 (M6G09_30830) tal 7013228..7014392 (-) 1165 Protein_6073 transaldolase -
  M6G09_RS30785 (M6G09_30835) recP/tkt 7014456..7016552 (-) 2097 WP_277724176.1 transketolase Machinery gene
  M6G09_RS30790 (M6G09_30840) - 7016710..7017651 (+) 942 WP_224294914.1 AraC family transcriptional regulator -
  M6G09_RS30795 (M6G09_30845) - 7017811..7019211 (-) 1401 WP_224301806.1 glycoside hydrolase family 16 protein -
  M6G09_RS30800 (M6G09_30850) - 7019589..7020926 (+) 1338 WP_224301805.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 74335.95 Da        Isoelectric Point: 5.2241

>NTDB_id=616081 M6G09_RS30785 WP_277724176.1 7014456..7016552(-) (recP/tkt) [Streptomyces sp. B146]
MSTQTSTQTVDSADRFEWTELDRRAVDTARVLAADAVQKVGNGHPGTAMALAPAAYTIFQKVMRHDPADPEWTGRDRFVL
SPGHTSLTLYTQLYLAGYELGLDDLKAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAP
GGESPFDHTVWAVVSDGDLQEGVSAEASSIAGHQRLGNLVLLYDDNHISIEGDTATAFSEDVLKRYEAYGWHTQRIEPAE
NGDVDVHALYAALTAAKAETGRPSIVGMRTVIAWPAPNARGTGASHGSALGADEVAATKRVLGFDPERSFEVSDEVLVHT
RRALDRGAEAHTAWDKRIAAWRDAAPERAALFDRVVAGRLPEGWEDTLPVFEAGGSVATRAASGKVLQALGPVLPELWGG
SADLAASNNTTIDKTSSFLPAGNPLPEADPYGRTVHFGIREFSMAAEMNGIALHGNTRVYGGTFLVFSDYMRNAVRLSAL
MQLPVTYVWTHDSVGLGEDGPTHQPVEHLAALRAIPGLNVVRPADANETATAWAEILRRHSTAPAPHGLVLTRQGVPTRE
PNPAAARGGYVLADASAGAPDVVLIATGSEVQLAVAAREALEAEGTPTRVVSMPSVEWFEEQPREYRESVLPPAVRARVA
VEAGIGLTWHKYVGDAGRVVSLEHFGASADARTLFTEFGFTAEHVAAAARESLAAARG

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=616081 M6G09_RS30785 WP_277724176.1 7014456..7016552(-) (recP/tkt) [Streptomyces sp. B146]
ATGAGTACGCAGACGAGCACGCAGACAGTGGACAGCGCGGACCGATTCGAATGGACCGAACTCGACCGGCGTGCCGTCGA
CACCGCCCGAGTTCTGGCGGCCGACGCCGTGCAGAAGGTCGGCAACGGCCATCCGGGCACGGCGATGGCTCTCGCCCCGG
CGGCGTACACGATCTTTCAGAAGGTGATGAGGCACGACCCCGCCGACCCCGAGTGGACCGGCCGGGACCGCTTCGTCCTC
TCCCCCGGCCACACGTCGCTGACCCTCTACACGCAGCTCTACCTCGCCGGGTACGAGCTGGGTCTGGACGACCTCAAGGC
GTTCCGCACGCACGGCTCGAAGACGCCGGGGCACCCCGAGTACGGTCACACGGCGGGTGTCGAGACGACGACCGGCCCGC
TGGGCCAGGGCGTCGCCAACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGATCCGGAGGCGCCC
GGGGGCGAGTCCCCCTTCGACCACACGGTCTGGGCGGTCGTCAGCGACGGCGACCTCCAGGAGGGCGTCTCCGCCGAGGC
GTCCTCGATCGCCGGCCACCAGCGGCTCGGCAATCTCGTCCTCCTCTACGACGACAACCACATCTCCATCGAGGGCGACA
CCGCGACCGCGTTCTCCGAGGACGTGCTGAAGCGGTACGAGGCCTACGGCTGGCACACGCAGCGCATCGAGCCCGCCGAG
AACGGCGACGTCGACGTGCACGCGCTGTACGCGGCGCTGACGGCGGCGAAGGCCGAGACCGGGCGCCCGTCCATCGTCGG
CATGCGCACGGTCATCGCCTGGCCCGCCCCGAACGCGCGCGGCACCGGGGCCTCCCACGGCTCCGCCCTCGGCGCGGACG
AGGTCGCCGCCACCAAGCGCGTCCTCGGCTTCGACCCGGAGCGGTCCTTCGAGGTCTCCGACGAGGTGCTCGTCCACACC
CGCCGGGCCCTGGACCGGGGCGCCGAGGCGCACACCGCGTGGGACAAGCGGATCGCCGCCTGGCGCGACGCCGCCCCCGA
GCGGGCGGCGCTGTTCGACCGCGTGGTGGCCGGCCGGCTGCCCGAGGGCTGGGAGGACACCCTGCCGGTGTTCGAGGCCG
GCGGGTCCGTCGCCACCCGCGCCGCCTCCGGCAAGGTGCTCCAGGCCCTCGGCCCGGTGCTGCCCGAGCTGTGGGGCGGC
TCGGCCGACCTGGCCGCTTCGAACAACACGACGATCGACAAGACGTCGTCCTTCCTCCCGGCGGGCAACCCCCTGCCGGA
GGCCGACCCCTACGGCCGCACCGTCCACTTCGGCATCCGCGAGTTCTCGATGGCCGCGGAGATGAACGGCATCGCGCTGC
ACGGCAACACCCGCGTCTACGGCGGAACGTTCCTGGTCTTCTCCGACTACATGCGCAACGCGGTCCGCCTGTCGGCGCTG
ATGCAGCTGCCGGTGACGTACGTGTGGACGCACGACTCCGTCGGCCTGGGCGAGGACGGCCCCACCCACCAGCCGGTCGA
GCACCTGGCCGCCCTGCGCGCGATCCCGGGCCTGAACGTGGTCCGCCCGGCCGACGCCAACGAGACCGCGACCGCCTGGG
CCGAGATCCTCCGGCGCCATTCCACCGCCCCGGCCCCGCACGGCCTCGTCCTCACCCGCCAGGGCGTGCCCACCCGCGAG
CCGAACCCGGCCGCGGCCCGCGGCGGCTACGTCCTCGCCGACGCCTCCGCAGGCGCCCCGGACGTCGTCCTGATCGCCAC
CGGCTCCGAGGTCCAGCTCGCCGTGGCGGCCAGGGAGGCGCTGGAGGCGGAGGGCACGCCCACCCGCGTGGTGTCGATGC
CGTCCGTCGAGTGGTTCGAGGAGCAGCCGCGCGAGTACCGCGAGAGCGTGCTGCCGCCGGCCGTGCGGGCCCGGGTGGCC
GTGGAGGCCGGGATCGGCCTGACCTGGCACAAGTACGTGGGGGACGCGGGCCGCGTCGTCTCCCTTGAGCACTTCGGCGC
CTCCGCCGACGCCAGGACCCTGTTCACCGAGTTCGGCTTCACCGCCGAGCACGTGGCCGCCGCCGCCAGGGAGTCCCTGG
CCGCCGCCCGCGGCTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(377-555)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(22-361)

Transketolase, C-terminal domain (Transketolase_C)

(579-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.222

96.705

0.447