Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SCI_RS08120 Genome accession   NC_022238
Coordinates   1629013..1630773 (-) Length   586 a.a.
NCBI ID   WP_020998020.1    Uniprot ID   U2XWX9
Organism   Streptococcus constellatus subsp. pharyngis C1050     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624013..1635773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCI_RS08095 (SCI_1587) - 1624457..1625182 (-) 726 WP_003070533.1 GntR family transcriptional regulator -
  SCI_RS08100 (SCI_1588) celB 1625216..1626484 (-) 1269 WP_006268498.1 PTS cellobiose transporter subunit IIC -
  SCI_RS08105 (SCI_1589) - 1626627..1628024 (+) 1398 WP_020998019.1 glycoside hydrolase family 1 protein -
  SCI_RS08110 (SCI_1590) - 1628158..1628478 (-) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  SCI_RS08115 (SCI_1591) - 1628489..1628803 (-) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  SCI_RS08120 (SCI_1592) rcrQ 1629013..1630773 (-) 1761 WP_020998020.1 ABC transporter ATP-binding protein Regulator
  SCI_RS08125 (SCI_1593) rcrP 1630763..1632529 (-) 1767 WP_006268071.1 ABC transporter ATP-binding protein Regulator
  SCI_RS08130 (SCI_1594) - 1632522..1632980 (-) 459 WP_006268244.1 MarR family winged helix-turn-helix transcriptional regulator -
  SCI_RS08135 (SCI_1595) - 1633101..1634288 (-) 1188 WP_006268214.1 NADH-dependent flavin oxidoreductase -
  SCI_RS08140 (SCI_1596) - 1634555..1634965 (-) 411 WP_006268326.1 peptide deformylase -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65232.50 Da        Isoelectric Point: 6.6736

>NTDB_id=61608 SCI_RS08120 WP_020998020.1 1629013..1630773(-) (rcrQ) [Streptococcus constellatus subsp. pharyngis C1050]
MENKKSSLFSQVKPYIKGFQFPLLVAFVGAMLSSVITVYGPVKLKEITNLITEGMRSRIDLKAISNIALFLAVLYAVGTV
LNYMQSFIISSVVQHFSKRLRTAIAEKINKLPLRYFDSHSQGDTLSRVTNDVDTVGQSLNQSLGTVISSSLLLIAVLFMM
FYNNVVLSFVTIGSVLIGFVFVALIMGKSQRFFRAQQENLASVNGYVEEMYSGHNVIVSYNATEESKKAFQMLNTNLYSS
MWKSQFISGIMMPLMIFIGNFGYVMVVLVGASMALNGDVTMGTIVAFMVYVRTFSQPLSQIAQGITTLQQASAAMGRVFE
FLAEPEMENDEHKSQQLTTLKGDVTFDKVFFGYNPDRTIIHDFSAKAKAGQKIAIVGPTGAGKTTIVNLLMKFYEIEKGR
ITIDGVDTKQMKRSEVHDAFSMVLQDTWLFEGTIKENLIYNQKNISDEAVVAATKVVGVHHFIKTLPKGYETVLDDTVSL
SVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMRNGNIIEQGN
HDQLMEENGFYADLYNSQFDEDAEYA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=61608 SCI_RS08120 WP_020998020.1 1629013..1630773(-) (rcrQ) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGAAAATAAAAAATCATCTTTATTTAGCCAAGTGAAACCCTATATCAAAGGATTCCAGTTTCCATTGCTCGTTGCATT
TGTGGGAGCAATGCTATCTAGTGTTATCACGGTTTATGGTCCGGTCAAATTAAAAGAAATTACCAATCTTATCACAGAAG
GAATGAGAAGTCGGATTGATCTGAAGGCGATCTCTAATATTGCTCTTTTCTTAGCCGTTTTATATGCGGTGGGTACTGTA
TTAAATTATATGCAATCCTTTATTATTTCGTCCGTCGTTCAGCATTTTTCAAAACGTTTACGGACAGCCATTGCGGAGAA
AATTAATAAATTACCCTTGCGGTATTTTGATAGCCATTCGCAAGGGGACACTCTTTCACGAGTCACTAATGACGTGGATA
CTGTTGGACAATCTCTGAACCAAAGTTTAGGCACAGTGATTTCATCAAGTTTGCTTCTTATTGCTGTTCTCTTTATGATG
TTTTATAACAACGTGGTTCTATCCTTTGTAACGATTGGATCGGTTTTGATTGGTTTTGTCTTTGTTGCGTTGATTATGGG
TAAATCACAACGGTTTTTCCGCGCACAACAAGAGAATCTTGCTAGTGTCAATGGATATGTGGAAGAGATGTATTCTGGTC
ACAATGTCATTGTCAGCTATAATGCTACCGAGGAATCAAAAAAAGCCTTTCAAATGCTTAATACTAATCTTTATAGTAGT
ATGTGGAAGTCCCAATTTATTTCTGGAATTATGATGCCGTTAATGATATTTATAGGGAACTTTGGTTATGTGATGGTTGT
ATTGGTTGGAGCGAGCATGGCATTGAATGGTGATGTCACGATGGGGACGATTGTTGCCTTTATGGTATATGTACGGACTT
TTTCTCAACCATTGTCCCAAATTGCACAAGGGATTACCACTCTTCAACAAGCTAGTGCTGCTATGGGGCGTGTATTTGAG
TTTTTAGCAGAGCCGGAAATGGAAAACGATGAGCACAAGTCTCAACAGCTCACAACTTTAAAGGGTGATGTTACCTTTGA
TAAGGTATTCTTTGGCTACAATCCGGATCGAACAATTATTCATGATTTTTCTGCCAAGGCTAAAGCCGGACAAAAGATTG
CCATTGTCGGTCCGACCGGTGCTGGGAAAACGACGATTGTCAATCTGTTGATGAAATTTTATGAAATTGAGAAAGGGCGG
ATTACTATTGATGGTGTTGATACCAAGCAAATGAAACGCTCTGAAGTGCATGATGCTTTCTCAATGGTCCTTCAAGACAC
TTGGTTATTTGAGGGAACGATTAAAGAAAATTTGATTTACAATCAGAAGAATATTTCTGATGAAGCGGTTGTGGCAGCGA
CTAAAGTTGTCGGGGTCCATCACTTTATCAAGACTTTGCCAAAAGGATACGAGACAGTGTTGGATGACACAGTCAGTCTT
TCTGTTGGGCAAAAGCAATTGCTGACTATCGCGCGTGCACTTCTTAAGGATGCTCCCTTACTTATCTTGGATGAAGCAAC
TTCATCTGTTGATACGCGGACAGAAGAATTGATCCAAAAAGCGATGGATAAGTTGATGGAAGGAAGGACTTCTTTCGTCA
TTGCTCACCGCTTGTCGACCATTCGTAATGCTGATTTGATTTTGGTCATGCGTAATGGTAATATCATTGAACAAGGAAAT
CACGATCAATTGATGGAAGAAAATGGCTTCTATGCTGATCTTTACAATAGTCAATTCGATGAAGATGCAGAGTATGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(23-298)

ABC transporter (ABC_tran)

(361-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2XWX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

70.79

99.317

0.703

Multiple sequence alignment