Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   LG336_RS22550 Genome accession   NZ_CP085225
Coordinates   4642382..4643332 (-) Length   316 a.a.
NCBI ID   WP_404329682.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4637382..4648332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS22530 (LG336_22425) - 4638178..4638618 (-) 441 WP_404329678.1 Dps family protein -
  LG336_RS22535 (LG336_22430) katA 4639148..4640596 (+) 1449 WP_404329679.1 catalase KatA -
  LG336_RS22540 (LG336_22435) - 4640687..4641445 (-) 759 WP_404329680.1 ABC transporter ATP-binding protein -
  LG336_RS22545 (LG336_22440) - 4641439..4642389 (-) 951 WP_404329681.1 iron chelate uptake ABC transporter family permease subunit -
  LG336_RS22550 (LG336_22445) ceuB 4642382..4643332 (-) 951 WP_404329682.1 ABC transporter permease Machinery gene
  LG336_RS22555 (LG336_22450) - 4643590..4645542 (-) 1953 WP_404329683.1 LTA synthase family protein -
  LG336_RS22560 (LG336_22455) - 4645851..4646069 (+) 219 WP_404329684.1 methionine aminopeptidase -
  LG336_RS22565 (LG336_22460) - 4646182..4647243 (+) 1062 WP_404329685.1 lactonase family protein -
  LG336_RS22570 (LG336_22465) - 4647449..4647961 (+) 513 WP_404329686.1 DoxX family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35004.25 Da        Isoelectric Point: 9.3642

>NTDB_id=616065 LG336_RS22550 WP_404329682.1 4642382..4643332(-) (ceuB) [Mesobacillus maritimus strain ADH-29]
MKLIYLIISFIVLAITSLFIGVQNISPLDLFQLTDEQTHILLVSRLPRLVSIILAGVGMSICGLIMQQLTRNKFVSPTTA
GTEDSARFGILVSMMLFSGAGQFVRVLVAFFFALLGSFIFMKLLDKVKYKDAIFIPLVGMMFGSIVGSITTFFAYKEDLI
QNMSSWLQGNFSMMIQGRYELLYISIPLIFIAYLYANKFTIAGMGEEFAVNLGLNHKQIMNIGLMIVALITAIVVLTVGM
IPFLGLIIPNIVTMYRGDHLQKSLSHTALLGAVFVLACDVLGRVVIYPYEVPIGLTVGVIGSGIFLYMIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=616065 LG336_RS22550 WP_404329682.1 4642382..4643332(-) (ceuB) [Mesobacillus maritimus strain ADH-29]
ATGAAACTTATTTACTTAATTATCAGCTTCATTGTTTTAGCGATCACTTCGTTGTTTATCGGAGTGCAAAATATTTCTCC
ACTAGATTTGTTCCAACTAACTGACGAGCAAACCCATATATTGTTAGTGAGTAGGCTTCCGCGATTAGTATCCATTATCT
TGGCGGGCGTTGGGATGAGTATTTGTGGGTTGATTATGCAGCAACTTACAAGAAACAAATTTGTCTCTCCCACTACGGCA
GGAACAGAAGATTCAGCTCGTTTCGGTATTTTGGTTTCCATGATGCTGTTTTCCGGAGCTGGACAGTTTGTAAGAGTACT
AGTTGCTTTCTTCTTTGCTCTTTTAGGAAGTTTCATCTTCATGAAATTACTAGATAAAGTGAAATACAAGGACGCTATTT
TCATTCCACTTGTGGGGATGATGTTTGGTAGTATTGTAGGTTCTATAACGACCTTCTTTGCCTACAAGGAAGATTTAATT
CAAAATATGTCTTCCTGGTTACAAGGAAACTTTTCAATGATGATCCAAGGGCGTTACGAGCTTTTATACATTAGTATTCC
ACTCATTTTTATCGCATACCTATATGCAAATAAATTTACAATCGCAGGTATGGGAGAAGAGTTCGCAGTCAATCTTGGAT
TGAATCATAAACAAATCATGAACATCGGTCTGATGATTGTTGCCTTGATTACGGCAATTGTCGTGCTGACAGTAGGAATG
ATTCCGTTTTTAGGGTTGATTATTCCCAACATCGTAACGATGTACCGTGGGGATCATTTACAAAAAAGCCTTTCTCATAC
TGCACTACTAGGGGCAGTCTTCGTGTTAGCCTGTGATGTATTAGGTCGAGTTGTTATCTATCCATACGAGGTACCTATCG
GTCTAACTGTCGGGGTAATTGGAAGCGGAATTTTTCTTTACATGATTATGAGGAGAAAGGCATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.667

94.937

0.528