Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LG336_RS19880 Genome accession   NZ_CP085225
Coordinates   4104610..4106301 (-) Length   563 a.a.
NCBI ID   WP_404329217.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4099610..4111301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS19860 (LG336_19750) - 4100681..4100950 (+) 270 WP_404329214.1 DUF2627 domain-containing protein -
  LG336_RS19865 (LG336_19755) - 4100951..4101688 (-) 738 WP_404329215.1 glycerophosphodiester phosphodiesterase -
  LG336_RS19870 (LG336_19760) spo0A 4102104..4102916 (-) 813 WP_404333234.1 sporulation transcription factor Spo0A -
  LG336_RS19875 (LG336_19765) spoIVB 4103199..4104497 (-) 1299 WP_404329216.1 SpoIVB peptidase -
  LG336_RS19880 (LG336_19770) recN 4104610..4106301 (-) 1692 WP_404329217.1 DNA repair protein RecN Machinery gene
  LG336_RS19885 (LG336_19775) ahrC 4106318..4106767 (-) 450 WP_404329218.1 transcriptional regulator AhrC/ArgR -
  LG336_RS19890 (LG336_19780) - 4106980..4107825 (-) 846 WP_404329219.1 TlyA family RNA methyltransferase -
  LG336_RS19895 (LG336_19785) dxs 4107829..4109721 (-) 1893 WP_404329220.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LG336_RS19900 (LG336_19790) - 4109824..4110711 (-) 888 WP_404333235.1 polyprenyl synthetase family protein -
  LG336_RS19905 (LG336_19795) - 4110720..4110953 (-) 234 WP_404329221.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 64126.20 Da        Isoelectric Point: 5.3722

>NTDB_id=616054 LG336_RS19880 WP_404329217.1 4104610..4106301(-) (recN) [Mesobacillus maritimus strain ADH-29]
MLSELSIRNFAIIESLSISFRKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFVRHGEDKAEIEGLFFLDSESHPCYAK
GKEFGIEIEDGMVVLRRDISKSGKSICRVNGKLVTIAILREIGSTLIDIHGQHEHQELMDETKHINLLDQFGSKDIYPAL
SEYQMVFKSYEQTLKKLKNLSENEQQIAHRLDLIQFQYEEIQSAQLKLNEDEELTEEKRKLNNFEKIFESIQSGYTSLKG
DQRGLDWIGMVMDHLETAADINPEYKELHESVTNCFYLLEDAARVLRSELDILEFDPRRLNDIEDRLTEINQLKRKYGQT
ISDILEYAARIEEEIETLQNKEVHIGQMEKELASLKKDLEVEALNLTKAREKWAKKLTSLIHQELKELYMEKTLFEVRID
NHGNQFLKNGRDKVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVARNSQVLCISHLPQVAAMSDTHLYINKEIQDGRTRTSVSPLTDLEKIREIGRMISGVEITDLTRQHAEELLNMAQFMK
TAK

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=616054 LG336_RS19880 WP_404329217.1 4104610..4106301(-) (recN) [Mesobacillus maritimus strain ADH-29]
TTGCTAAGCGAATTATCAATTAGGAATTTTGCTATTATTGAGTCTCTCTCTATTTCTTTTCGAAAGGGATTAACGGTTTT
AACGGGGGAAACTGGCGCAGGGAAGTCAATTATTATTGACGCCGTCCATCTTCTTGTGGGAGGACGCGGTTCAGCGGAAT
TTGTTCGTCACGGGGAAGATAAGGCAGAAATTGAAGGATTATTTTTTCTTGATTCCGAGAGTCATCCTTGCTATGCCAAA
GGAAAGGAATTTGGGATTGAAATCGAGGATGGAATGGTTGTTTTACGTCGAGATATTTCTAAAAGTGGAAAAAGTATCTG
TAGAGTCAACGGAAAGCTCGTGACAATCGCAATATTGCGTGAGATTGGTTCAACTCTAATTGACATTCATGGTCAACATG
AACACCAGGAACTCATGGATGAGACAAAACATATCAATTTATTAGATCAATTTGGCTCAAAGGACATCTATCCAGCCCTT
TCTGAATATCAAATGGTCTTTAAATCCTATGAACAAACCTTGAAAAAGTTAAAAAACCTCAGCGAAAATGAGCAACAAAT
CGCTCATCGACTCGACCTAATTCAATTTCAATATGAAGAGATTCAGTCCGCTCAATTAAAGCTGAATGAGGATGAAGAAC
TAACAGAAGAAAAAAGAAAACTGAATAATTTTGAGAAAATCTTCGAAAGTATTCAATCGGGCTATACTTCATTAAAAGGA
GATCAAAGAGGTCTTGATTGGATTGGGATGGTAATGGATCATCTCGAAACTGCAGCTGATATTAATCCGGAATATAAGGA
GTTACATGAATCAGTTACCAATTGTTTCTATCTACTTGAGGATGCTGCTAGGGTATTACGAAGTGAATTGGACATACTAG
AATTTGATCCTCGGCGCTTAAATGACATTGAGGACAGACTGACAGAAATAAATCAATTGAAACGGAAATATGGACAAACA
ATCTCTGATATTTTGGAATATGCAGCACGAATTGAGGAAGAAATCGAAACCCTTCAAAACAAAGAAGTCCACATTGGGCA
AATGGAAAAGGAACTTGCTTCCTTGAAGAAGGATCTAGAAGTAGAAGCGTTAAATCTTACCAAGGCAAGGGAAAAGTGGG
CAAAAAAACTGACGAGCCTTATCCATCAGGAATTAAAAGAGCTCTATATGGAAAAGACTTTATTTGAAGTTAGGATCGAT
AACCATGGGAATCAGTTCTTGAAAAATGGTAGGGACAAGGTAGAATTTTATATTTCAACAAATCCTGGAGAACCATTAAA
ACCATTATCCAAAATCGCTTCCGGTGGGGAATTATCGAGGATCATGCTAGCGTTAAAAAGTATTTTCTCCAAACATCAGG
GAGTCACCTCCATTATTTTCGATGAGGTCGATACCGGTGTAAGTGGAAGAGTGGCTCAAGCGATTGCTGAAAAGATCTAT
AAGGTAGCTAGAAATTCGCAGGTTTTGTGTATTTCACATTTGCCTCAGGTGGCAGCAATGTCTGATACACATTTGTATAT
TAATAAGGAAATTCAGGATGGCCGTACTAGGACTTCTGTATCACCTCTGACCGATTTAGAAAAAATTCGTGAAATTGGCA
GGATGATTTCAGGCGTTGAAATCACGGATTTAACTAGGCAGCATGCAGAGGAATTGCTTAACATGGCTCAATTTATGAAG
ACCGCAAAATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.435

100

0.638