Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LG336_RS00545 Genome accession   NZ_CP085225
Coordinates   108449..109828 (+) Length   459 a.a.
NCBI ID   WP_404330681.1    Uniprot ID   -
Organism   Mesobacillus maritimus strain ADH-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 103449..114828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG336_RS00525 (LG336_00525) - 103536..103997 (+) 462 WP_404330677.1 CtsR family transcriptional regulator -
  LG336_RS00530 (LG336_00530) - 104023..104571 (+) 549 WP_404330678.1 UvrB/UvrC motif-containing protein -
  LG336_RS00535 (LG336_00535) - 104574..105644 (+) 1071 WP_404330679.1 protein arginine kinase -
  LG336_RS00540 (LG336_00540) clpC 105662..108100 (+) 2439 WP_404330680.1 ATP-dependent protease ATP-binding subunit ClpC -
  LG336_RS00545 (LG336_00545) radA 108449..109828 (+) 1380 WP_404330681.1 DNA repair protein RadA Machinery gene
  LG336_RS00550 (LG336_00550) disA 109833..110906 (+) 1074 WP_404330682.1 DNA integrity scanning diadenylate cyclase DisA -
  LG336_RS00555 (LG336_00555) - 111108..112190 (+) 1083 WP_404330683.1 PIN/TRAM domain-containing protein -
  LG336_RS00560 (LG336_00560) ispD 112209..112898 (+) 690 WP_404330684.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LG336_RS00565 (LG336_00565) ispF 112947..113429 (+) 483 WP_404330685.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49705.95 Da        Isoelectric Point: 7.4333

>NTDB_id=616033 LG336_RS00545 WP_404330681.1 108449..109828(+) (radA) [Mesobacillus maritimus strain ADH-29]
MAKKKTKFMCQECGYESAKWMGKCPGCGQWNKMVEETESSGTGRRGAFNHTSSTGVAAKATPITSIETVSEPRIKTELNE
LNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSHQLAKINHSVLYISGEESLRQTKLRADRLGISSDNLLVYSETNLEEI
SLTIEKNSPDFVIVDSIQTVYHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVLY
FEGERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALISPTS
FGNPRRMATGTDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAVSIASSFRDKPTRATDCIIGEVGL
TGEVRRVSRVEQRVQEAAKLGFERVILPENNLGGWTAPKGITLIGVSSVSQTLKVTLEG

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=616033 LG336_RS00545 WP_404330681.1 108449..109828(+) (radA) [Mesobacillus maritimus strain ADH-29]
ATGGCTAAGAAAAAAACAAAGTTCATGTGTCAGGAATGTGGCTATGAATCGGCTAAATGGATGGGCAAATGCCCTGGGTG
TGGGCAGTGGAATAAGATGGTTGAGGAAACAGAAAGTTCAGGAACAGGCCGCAGGGGCGCATTTAACCATACTAGCAGTA
CAGGGGTTGCAGCGAAAGCAACACCAATTACAAGCATAGAAACGGTTAGTGAGCCACGAATTAAAACCGAGTTAAATGAA
TTGAACCGGGTACTTGGCGGAGGGGTGGTTAAGGGTTCGCTAGTCCTTATTGGTGGAGACCCTGGGATTGGAAAGTCGAC
GCTATTGCTGCAGGTTTCCCACCAACTCGCTAAAATCAATCATTCTGTTTTATATATTTCTGGTGAAGAGTCGCTTAGAC
AGACAAAGCTGAGAGCTGACCGGCTCGGTATCTCTTCTGATAACCTCCTTGTTTATTCGGAAACGAACTTGGAAGAAATT
AGTTTGACGATTGAGAAGAACTCCCCTGATTTTGTCATCGTCGACTCCATCCAAACGGTTTACCATCCAGAAGTGACTTC
CGCTCCGGGTAGTGTCTCACAAGTAAGGGAATGTACTGCCGAGCTGATGCGGATAGCCAAGACAAAAGGAATTGCTATTT
TTATAGTTGGTCATGTAACCAAGGAAGGCTCAATTGCTGGACCACGTTTGCTTGAACATATGGTCGATACGGTTCTTTAC
TTTGAAGGAGAACGTCATCATACATATCGAATCTTACGTGCTGTAAAAAATCGCTTTGGCTCAACAAATGAAATGGGAAT
CTTTGAGATGAAGGAAAGCGGCCTTGAAGAAGTAGCCAATCCTTCGGAAATCTTCCTCGAGGAACGATCACAAGGTGCGT
CGGGTTCCACTGTAGTTGCCTCAATGGAAGGGACTAGACCGGTACTAGTTGAAATTCAAGCTCTCATTTCTCCAACAAGC
TTTGGAAATCCACGAAGAATGGCAACTGGGACAGATCATAATCGGGTGAGCCTTTTGATGGCTGTACTAGAAAAGCGGGT
CGGTTTATTGCTACAGAATCAGGACGCCTATTTGAAAGTAGCTGGAGGAGTGAAGTTAGATGAGCCAGCCATTGACTTAG
CCATTGCGGTTAGCATTGCATCTAGCTTCAGAGATAAACCCACACGTGCAACAGACTGTATCATTGGTGAGGTCGGACTT
ACAGGGGAAGTACGGCGGGTCTCACGTGTCGAACAACGGGTACAAGAAGCAGCGAAGCTCGGTTTTGAAAGAGTCATCCT
ACCTGAAAATAACCTCGGCGGCTGGACTGCGCCTAAGGGGATAACCTTAATCGGTGTATCTTCAGTCAGCCAGACATTAA
AGGTCACACTGGAGGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.391

100

0.776
  radA Streptococcus mitis NCTC 12261

63.216

98.911

0.625
  radA Streptococcus pneumoniae Rx1

63.216

98.911

0.625
  radA Streptococcus pneumoniae D39

63.216

98.911

0.625
  radA Streptococcus pneumoniae R6

63.216

98.911

0.625
  radA Streptococcus pneumoniae TIGR4

63.216

98.911

0.625
  radA Streptococcus mitis SK321

62.996

98.911

0.623