Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   LG316_RS06110 Genome accession   NZ_CP085223
Coordinates   1241347..1243179 (-) Length   610 a.a.
NCBI ID   WP_079577030.1    Uniprot ID   -
Organism   Malaciobacter canalis strain ADH2-947     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236347..1248179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG316_RS06085 (LG316_06065) - 1236443..1238200 (+) 1758 WP_404320135.1 YgiQ family radical SAM protein -
  LG316_RS06090 (LG316_06070) - 1238282..1238851 (+) 570 WP_079577034.1 adenylate kinase -
  LG316_RS06095 (LG316_06075) - 1238867..1239646 (+) 780 WP_404320137.1 competence/damage-inducible protein A -
  LG316_RS06100 (LG316_06080) - 1239649..1240317 (-) 669 WP_404320139.1 tetratricopeptide repeat protein -
  LG316_RS06105 (LG316_06085) - 1240314..1241336 (-) 1023 WP_404320141.1 alanine racemase -
  LG316_RS06110 (LG316_06090) uvrC 1241347..1243179 (-) 1833 WP_079577030.1 excinuclease ABC subunit UvrC Machinery gene
  LG316_RS06115 (LG316_06095) - 1243216..1244124 (-) 909 WP_079577029.1 hypothetical protein -
  LG316_RS06120 (LG316_06100) - 1244223..1244990 (-) 768 WP_404320143.1 choline/ethanolamine kinase family protein -
  LG316_RS06125 (LG316_06105) pnuC 1244974..1245516 (-) 543 WP_404320145.1 nicotinamide riboside transporter PnuC -
  LG316_RS06130 (LG316_06110) - 1245701..1245979 (+) 279 WP_079577027.1 putative quinol monooxygenase -
  LG316_RS06135 (LG316_06115) - 1245990..1246625 (+) 636 WP_404320147.1 hypothetical protein -
  LG316_RS06140 (LG316_06120) - 1246622..1247122 (-) 501 WP_404320149.1 SprT-like domain-containing protein -
  LG316_RS06145 (LG316_06125) - 1247126..1247431 (-) 306 WP_228145268.1 J domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 71439.91 Da        Isoelectric Point: 9.4921

>NTDB_id=616014 LG316_RS06110 WP_079577030.1 1241347..1243179(-) (uvrC) [Malaciobacter canalis strain ADH2-947]
MNLEEKLKELPNSAGVYQYFNKDGHLLYIGKAKVLKNRVKSYFKFTPNLAPADKLSPRIYKMITEVKSLEWIIVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIVIDYKEDFPRLEITRRVLKDKNIKYFGPYSTGARDMLDSIYEIIPLVQKKSC
IKGKEACLFHQIKKCYAPCVGKISKEEYSKIVDEALEYIYNKNKLIKKLNERMLQYSEEFRFEEAMKIRDRIKTIEKSQI
HTGMDLASNDNLDLFAIKASKEKAVIVRMFFRDGKLASSNHDYLKINQKELDIDLNEAYKRAIINYYDNEIPLLPKEIVV
ADEITQEIEELQEFIKDRFEKNIPIIHPKRGKKTQIIKIAINNCNELLRLQNSSTTTIYKQLQELLNLSYTPNRFECFDN
SHMMGQATVGAMITWEEKFIKTDYRHYNLEAKDEYAQMKETLIRRVQSFEKNPAPDIWVIDGGETLLKLAIDIRNSVGVN
LDIIAIAKEKLDFKAHRAKGSAKDIIYFEENSSIKRVDLLPSDKRLQFIQRLRDEAHRFAISFHKKQKRKDDSKISLLQI
KGIGEAKVKKLLLYFGEFEKIKNASYDELQVVLNKKDASLLIDYFKTLDN

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=616014 LG316_RS06110 WP_079577030.1 1241347..1243179(-) (uvrC) [Malaciobacter canalis strain ADH2-947]
ATGAACTTAGAAGAGAAACTTAAAGAATTACCAAATAGTGCTGGTGTTTATCAGTACTTTAATAAAGATGGACACTTACT
TTATATAGGAAAAGCAAAGGTACTAAAAAATAGAGTTAAATCATATTTTAAATTTACTCCTAATTTAGCCCCAGCTGATA
AATTAAGTCCTAGAATTTACAAAATGATAACAGAAGTAAAATCTTTAGAGTGGATTATTGTACCAAATGAACATGATGCA
CTTATACTTGAAAATTCGCTTATTAAACAACTTAAGCCAAAATATAATATTTTATTAAGAGATGATAAAACATATCCTTA
TATTGTTATTGATTATAAAGAGGATTTTCCAAGATTAGAGATAACAAGAAGAGTTTTAAAAGACAAAAATATCAAATACT
TTGGTCCATATTCTACTGGTGCTAGAGATATGCTTGATAGTATTTATGAGATAATTCCTTTAGTGCAAAAAAAATCTTGT
ATTAAAGGAAAAGAAGCTTGTCTTTTTCATCAAATAAAAAAGTGTTATGCTCCTTGTGTTGGAAAAATTTCAAAAGAAGA
GTATAGTAAAATAGTTGATGAAGCCTTAGAGTATATTTACAATAAAAATAAGTTAATTAAAAAATTAAATGAAAGAATGC
TTCAATACTCAGAAGAGTTTAGATTTGAAGAAGCTATGAAAATTAGAGATAGAATAAAAACAATTGAAAAATCTCAAATC
CACACAGGAATGGATTTAGCAAGTAATGATAACCTAGATTTATTTGCAATAAAAGCATCAAAAGAAAAAGCCGTAATAGT
AAGAATGTTTTTTAGAGATGGCAAGTTAGCTTCAAGTAATCATGATTATTTAAAAATAAATCAAAAAGAGCTTGACATAG
ACCTAAATGAAGCATACAAAAGAGCAATAATTAACTACTATGACAATGAAATTCCTCTACTACCAAAAGAGATAGTTGTA
GCTGATGAAATAACACAAGAAATTGAAGAGCTTCAAGAGTTTATAAAAGATAGATTTGAAAAAAATATTCCAATTATTCA
TCCAAAAAGAGGGAAGAAAACACAAATTATAAAAATTGCAATAAATAACTGTAATGAACTTTTAAGACTTCAAAATAGTA
GTACAACTACTATTTATAAACAACTACAAGAGTTATTAAACCTTTCATATACACCAAATAGATTTGAATGCTTTGATAAT
TCACATATGATGGGACAAGCAACAGTTGGCGCAATGATTACGTGGGAAGAGAAATTTATAAAAACAGATTATAGGCACTA
TAATCTTGAAGCAAAAGATGAATATGCACAAATGAAAGAAACATTAATAAGAAGAGTACAAAGCTTTGAAAAAAATCCAG
CACCTGATATTTGGGTTATTGATGGAGGAGAAACTTTATTAAAACTTGCTATTGATATAAGAAACTCCGTGGGAGTAAAT
CTTGACATAATTGCAATAGCAAAAGAAAAACTTGATTTTAAAGCACATAGAGCAAAAGGAAGTGCAAAAGATATAATCTA
TTTTGAAGAAAATAGTAGTATTAAAAGAGTTGATTTACTTCCAAGTGATAAAAGATTACAGTTTATTCAAAGACTAAGAG
ATGAAGCACATAGATTTGCTATCTCCTTTCATAAAAAACAAAAAAGAAAAGATGATAGTAAAATATCTTTACTTCAAATA
AAAGGAATAGGTGAAGCTAAAGTTAAAAAACTTCTTTTATATTTTGGAGAGTTTGAAAAAATCAAAAATGCTTCTTATGA
TGAGCTTCAAGTGGTATTAAATAAAAAAGATGCTTCTTTATTAATTGACTATTTTAAAACATTAGATAACTAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-541)

UvrB/uvrC motif (UVR)

(204-237)

GIY-YIG catalytic domain (GIY-YIG)

(15-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.003

98.033

0.5